Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 567,312 – 567,405 |
Length | 93 |
Max. P | 0.786078 |
Location | 567,312 – 567,405 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -11.02 |
Energy contribution | -13.09 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.37 |
Structure conservation index | 0.49 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 567312 93 - 22224390 UAUUGAAUAUCAACUACAUUCAGCCAGCACUUAU--AAAAUUUAAAAGAUAAUUAGUGAUGAACGCUGAUGAUUUUG-------------------------UGGCAUACGAUAUUCAGU .((((((((((..(((((.(((..((((.(((.(--(.....)).)))....(((....)))..)))).)))...))-------------------------))).....)))))))))) ( -20.90) >DroSec_CAF1 31401 92 - 1 UAUUGAAUAUCAACUACAUUCAGCCAGCACUGA---AAAAUGUAAAAGUAAAUCAGUGAUGAACGCUGCUGAUUUUA-------------------------UGGCACACGAUAUUCAGU .((((((((((.......(((((......))))---)...(((......(((((((((........)))))))))..-------------------------..)))...)))))))))) ( -22.60) >DroSim_CAF1 30884 92 - 1 UAUUGAAUAUCAACUACAUUCAGCCAGCACUGA---AAAAUGUAAAAGUAAAUCAGUAAUGAACGCUGCUGAUUUUA-------------------------UGGCACACGAUAUUCAGU .((((((((((.......(((((......))))---)...(((......(((((((((........)))))))))..-------------------------..)))...)))))))))) ( -23.90) >DroEre_CAF1 32166 120 - 1 UAUUCAACUUCAACUACAUUCUGCCAGCACUGAACAAAAAUGUAUAAGUAAAUCAGUGAUGAACGCUGAUGAUUAAAGAUGAAAAGUGGGUUUGCUUGUUUUCGGCACACCACUUUCAGC .........(((.((....((...(((((((..(((....)))...)))...(((....)))..))))..))....)).)))(((((((...((((.......))))..))))))).... ( -23.40) >consensus UAUUGAAUAUCAACUACAUUCAGCCAGCACUGA___AAAAUGUAAAAGUAAAUCAGUGAUGAACGCUGAUGAUUUUA_________________________UGGCACACGAUAUUCAGU .((((((((((........(((((.((((((...............)))...(((....)))..))))))))...............................(.....))))))))))) (-11.02 = -13.09 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:29 2006