Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,480,532 – 4,480,652 |
Length | 120 |
Max. P | 0.540000 |
Location | 4,480,532 – 4,480,652 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -26.40 |
Energy contribution | -26.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.99 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4480532 120 - 22224390 AACCAUGUCCCAAUCCGCGGAGGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACACCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC ......((((((.((((((((((((.................(((......))).................((((......))))))))))..(.....)...)))..))).)))))).. ( -28.10) >DroSec_CAF1 81969 120 - 1 AACAAUGUCCCAAUCCGCGGAAGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACACCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC ......((((((.((((((...(((.................(((......)))...............((((((......))))))......))).......)))..))).)))))).. ( -26.20) >DroSim_CAF1 75481 120 - 1 AACAAUGUCCCAAUCCGCGGAAGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACCCCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC ......((((((.((((((...(((.................(((......)))...............((((((......))))))......))).......)))..))).)))))).. ( -25.70) >consensus AACAAUGUCCCAAUCCGCGGAAGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACACCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC ......((((((.((((((...(((.................(((......)))...............((((((......))))))......))).......)))..))).)))))).. (-26.40 = -26.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:43 2006