Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,474,002 – 4,474,122 |
Length | 120 |
Max. P | 0.606046 |
Location | 4,474,002 – 4,474,122 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.50 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -20.12 |
Energy contribution | -22.57 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 0.60 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4474002 120 + 22224390 CUUUUUGCUGGUUCAGCUGUUUCCGCAGCUGGUAAAGUUUCUGUUUCUGGAGCAAUACAAACUCUUCAAGCUGCUCGUUCUCAUAAUGCUCGCAGAACUGACGCUGCCUUUGCUGGACAA ..........(((((((.......(((((..(((..(((((.......)))))..))).......(((..((((..((.........))..))))...))).)))))....))))))).. ( -29.90) >DroSec_CAF1 75568 93 + 1 CUUUUUGCUGGUUCAGCUGCUUCUGCAGCUGGUAAAGUUUCUGUUCCUGGAGCAAUACAAACUGUUCCAGCUCCUCGGUCUGAUAAU---------------------------GGACAA ......(((...((((((((....))))))))...)))........((((((((........)))))))).......((((......---------------------------)))).. ( -30.30) >DroSim_CAF1 72772 120 + 1 CUCUUUGCUGGUUCAGCUGCUUCUGCAGCUGGUAAAGUUUCUGUUGCUGGAGCAAUACAAACUGUUGCUGCUGCUGGUUCUGAUAAUGCUCGCGGAACUGACGCUGUCUUUGCUGGACAA ..........(((((((.((.((.(((((.((((((((((.((((((....)))))).))))).)))))))))).(((((((..........))))))))).)).......))))))).. ( -40.70) >consensus CUUUUUGCUGGUUCAGCUGCUUCUGCAGCUGGUAAAGUUUCUGUUCCUGGAGCAAUACAAACUGUUCCAGCUGCUCGUUCUGAUAAUGCUCGC_GAACUGACGCUG_CUUUGCUGGACAA ..........(((((((.......((((((((...(((((.((((.(....).)))).)))))...)))))))).................((((........))))....))))))).. (-20.12 = -22.57 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:40 2006