Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,472,536 – 4,472,640 |
Length | 104 |
Max. P | 0.994583 |
Location | 4,472,536 – 4,472,640 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.42 |
Mean single sequence MFE | -28.78 |
Consensus MFE | -22.42 |
Energy contribution | -21.43 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.24 |
Mean z-score | -1.85 |
Structure conservation index | 0.78 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4472536 104 + 22224390 CGGAACUUUUAAAUUUGGCGGAAAACGGUGUGCCCAGAUGUAAAGAU----------------CGAAAACAUAGGCAUUUGGCCACACUGCGAUAUAGAUUUAAAUCGAUCGUCGACCCG (((....((((((((((.((.....(((((((.((((((((......----------------...........)))))))).)))))))))...))))))))))(((.....))).))) ( -28.73) >DroSec_CAF1 74136 104 + 1 CGGAACUUUUAAGUUUGGCGGGAAAUGGUGUGCCCAGAUGUAAAGAA----------------CGAUAACAUAGACAUUUGGCCACACUGCGAUAUAGAUUUAAAUCGAUCGUAAACCCG (.(((((....))))).)((((....((((((.((((((((......----------------...........)))))))).))))))(((((...(((....))).)))))...)))) ( -31.53) >DroYak_CAF1 75102 118 + 1 CGUAACUUUUAAAUUUGGCAGAAAAUAGUGUGCCCAACUGUAAGGAAUGCAUUGAGACGCCCUCUAAAAUAUGUGCAUUUGGUCACACUGCGAUACAGAUUUAAAUAGGUUUUAAAUU-- ...((((((((((((((........(((((((.((((.((((...........(((.....))).........)))).)))).))))))).....))))))))))..)))).......-- ( -26.07) >consensus CGGAACUUUUAAAUUUGGCGGAAAAUGGUGUGCCCAGAUGUAAAGAA________________CGAAAACAUAGGCAUUUGGCCACACUGCGAUAUAGAUUUAAAUCGAUCGUAAACCCG .......((((((((((........(((((((.((((((((.................................)))))))).))))))).....))))))))))............... (-22.42 = -21.43 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:39 2006