Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,469,394 – 4,469,514 |
Length | 120 |
Max. P | 0.593518 |
Location | 4,469,394 – 4,469,514 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -30.71 |
Energy contribution | -30.27 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.97 |
Structure conservation index | 0.83 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4469394 120 + 22224390 GCACAAAAAAUGGCCGAAACCAUUUUGGAGCAGGCCAUCAAGGCGGGCAAGCCAUUGAGUCCACCACCCACCAAGGAGAAUGCCUCGCCCGCCAAUCCAACUGUGGCCACAACAAUGCAA (((.......(((((....((.....)).((((........(((((((.((.((((...(((............))).)))).)).))))))).......)))))))))......))).. ( -37.88) >DroSec_CAF1 71036 120 + 1 GCGCAAAAAAUGGCCGAAACCAUUUUGGAGCAGGCCAUCAAGGCGGGCAAGCCGUCGAGUCCACCACCCACCAAGGAGAAUGCCCCGCCCGCCAAUCCAACCGUGGCCACAACCAUGCAG ((((..(((((((......)))))))...)).((((((...(((((((..((..((...(((............)))))..))...))))))).........))))))........)).. ( -37.20) >DroYak_CAF1 71897 120 + 1 GCACAAAAAAUGGCCGAAACCAUUCUGGAGCAGGCCAUCAAGGCGGGCAAGCCAUCGACUCCACCGCCCGCCAAGGAAAAUGCACCGCCAGCCAAUCCCAUCGUGGCCACCACCAUGCAG (((.....(((((......))))).(((.(..((((((...(((((((.................)))))))..(((....((.......))...)))....))))))..).)))))).. ( -35.93) >consensus GCACAAAAAAUGGCCGAAACCAUUUUGGAGCAGGCCAUCAAGGCGGGCAAGCCAUCGAGUCCACCACCCACCAAGGAGAAUGCCCCGCCCGCCAAUCCAACCGUGGCCACAACCAUGCAG (((......((((((....((.....))....))))))...((((((((..((.....................))....))).))))).((((.........))))........))).. (-30.71 = -30.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:36 2006