Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,467,749 – 4,467,869 |
Length | 120 |
Max. P | 0.945616 |
Location | 4,467,749 – 4,467,869 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.39 |
Mean single sequence MFE | -55.13 |
Consensus MFE | -53.36 |
Energy contribution | -53.03 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.07 |
Mean z-score | -2.28 |
Structure conservation index | 0.97 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4467749 120 - 22224390 UUCGCCUUGGUGGUGAAGGCAUAGUUGCACACGGCGCACUCGUACGGACGAUCUCCGUUGUGGGUACGCAUGUGACGCACCAGGGCGGCCUUGUCGCAAACGGCGUAGGGACACAUGUUG .(((((((((((((....(((....))).(((((((.((((..(((((.....)))))...)))).))).)))))).)))))))))))(((((.(((.....)))))))).......... ( -50.90) >DroSec_CAF1 69396 120 - 1 UUCGCCUUGGUGGUGAAGGCAUAGUUGCACACGGCGCACUCGUACGGACGAUCUCCGUUGUGGGUGCGCAUGUGGCGCACCAAGGCGGCCUUGUCGCAAACGGCGUAGGGACACAUGUUG .(((((((((((((....(((....))).((((((((((((..(((((.....)))))...)))))))).)))))).)))))))))))(((((.(((.....)))))))).......... ( -58.30) >DroYak_CAF1 70276 120 - 1 UUCGCCUUGGUGGUGAAGGCGUAGUUGCACACGGCGCACUCGUACGGACGAUCGCCGUUGUGGGUGCGCAUGUGCCGCACCAGGGCGGCCUUGUCGCAAACGGCAUAGGGACACAUGUUG .((((((((((((((...(((((.(..((.((((((...((((....)))).))))))))..).)))))...))))..))))))))))((((((((....))))).)))(((....))). ( -56.20) >consensus UUCGCCUUGGUGGUGAAGGCAUAGUUGCACACGGCGCACUCGUACGGACGAUCUCCGUUGUGGGUGCGCAUGUGACGCACCAGGGCGGCCUUGUCGCAAACGGCGUAGGGACACAUGUUG .(((((((((((.((...(((....))).((((((((((((..((((.......))))...)))))))).)))).)))))))))))))((((((((....))))).)))(((....))). (-53.36 = -53.03 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:30 2006