Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,465,717 – 4,465,822 |
Length | 105 |
Max. P | 0.926931 |
Location | 4,465,717 – 4,465,822 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.04 |
Mean single sequence MFE | -44.55 |
Consensus MFE | -25.59 |
Energy contribution | -28.15 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.14 |
Mean z-score | -2.60 |
Structure conservation index | 0.57 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4465717 105 - 22224390 ------------UAGCACCAAUACCACUGGUCGCAGUAGUGUUCGUAGCGCUGCUA---CUGUUACCCAGAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG ------------..((..((.(((((((((((((((((((((.....)))))((((---(((.....))).)))).)))))))))))))))).))...))......((((....)))).. ( -43.60) >DroSec_CAF1 67356 105 - 1 ------------CAGCACCAAUGCCACUGGUGGCAGUAGUGUUCGUUGCGCUGCUA---CUGUUACCCAGAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG ------------((((((((..(((((.((((((((((((((.....)))))))).---(((.....)))...)))))))))))...))))))))..((.(((..........))).)). ( -47.90) >DroEre_CAF1 71098 117 - 1 CAGCGCCAGCGCCAGCACCAAUACCACUGCUGGCAGUUGUGUUGGCAGUGCUGCUG---CUGUUACCCAAAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGACUCCG ..(((((((((((((((.((....((((((..(((....)))..)))))).)).))---)))...........(((((((....))))))))).)))))))).................. ( -49.70) >DroYak_CAF1 68250 95 - 1 -------------------------AGUGGUGGCAGUGGUGUUGGUUGUGCUGCUGCUACUGUUACCCAAAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG -------------------------..((((.((((((((.((((..((((....)).))......))))...)))))))).))))(((((((.....))).))))((((....)))).. ( -37.00) >consensus ____________CAGCACCAAUACCACUGGUGGCAGUAGUGUUCGUAGCGCUGCUA___CUGUUACCCAAAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG ............((((((((...((((.((((((((((((((.....)))))))).....((((.....))))))))))))))....))))))))..((.(((..........))).)). (-25.59 = -28.15 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006