Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,463,796 – 4,463,912 |
Length | 116 |
Max. P | 0.910058 |
Location | 4,463,796 – 4,463,912 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.57 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -22.51 |
Energy contribution | -22.14 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.11 |
Mean z-score | -2.21 |
Structure conservation index | 0.81 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4463796 116 + 22224390 A-AGUCCAUUCCCAAA--A-CCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCGAUGCUAAAACCCUUGAACUUUGACACACCACG .-.(((....((((((--(-(.((......)).))))))))..((((((((....)).(((((..(((((............)))))...))))).......)))))).)))........ ( -30.30) >DroSec_CAF1 65373 112 + 1 A-AGUCCUUUCCCGAA--A-CCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCGAUGCUAAAACCCUUGAACUUUGACACAC---- .-.(((....((((((--(-(.((......)).))))))))..((((((((....)).(((((..(((((............)))))...))))).......)))))).)))....---- ( -30.00) >DroEre_CAF1 69060 114 + 1 AAAGUCCUUUUCCGAA--AUCCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCAAUGCUAAAACCCUUGAACUUUGACACAC---- ...........(((((--(..((.......))..))))))(((((((((((....)).(((((..(((((............)))))...))))).......)))).)))))....---- ( -27.60) >DroYak_CAF1 66182 116 + 1 AAAGUCCUUUUCCAAAAAACCCCUUUCCUUGUUGUUUUGGGUCAAGUUCUGAAUGCCAUUAGCCGGGUCAAAAAAUUACCCAUGGCCAAUGCUAAGACCCUUGAACUUUGACACAC---- ...........(((((((((..........))).))))))(((((((((.........(((((..(((((............)))))...))))).......)))).)))))....---- ( -23.69) >consensus A_AGUCCUUUCCCAAA__A_CCCCUCCCUUGGUGUUUUGGGUCAAGUUCUGCCUGCAAUUAGCCGGGUCAAAAAAUUACCCAUGACCAAUGCUAAAACCCUUGAACUUUGACACAC____ ...........(((((....(.((......)).).)))))(((((((((.........(((((..(((((............)))))...))))).......)))).)))))........ (-22.51 = -22.14 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:20 2006