Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,460,974 – 4,461,090 |
Length | 116 |
Max. P | 0.865644 |
Location | 4,460,974 – 4,461,090 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.58 |
Mean single sequence MFE | -37.33 |
Consensus MFE | -31.55 |
Energy contribution | -31.00 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.15 |
Mean z-score | -1.84 |
Structure conservation index | 0.85 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4460974 116 - 22224390 UCG--GAAUUCAGUGUCGAAAAGAAUGCAAAUUUCCAUCGAAAGCGAU--UGGAAAACUUAGUCGCUUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCGUGGGUGGCACAAUAAA (((--(((..(((((((((...((((....))))...))))(((((((--(((.....))))))))))....)))))...))))))((((((..(.(((....))).)..)).))))... ( -34.90) >DroSec_CAF1 62468 116 - 1 CAU--GAAUUCAGUGCCGAAAAGCAUGCAAAUUGCCAUCGAAAGCGAU--UGGAAAACUUCGCCGCUUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCGUGGGUGGCACAGUAAA ...--.......((((((.....(((((......((((((....))).--)))...........((.(((((.((((.(((...))).)))).))))).)))))))..))))))...... ( -34.30) >DroEre_CAF1 65994 119 - 1 UCGCAGAAUUUGGUGCCA-GAACCGAGCAAAUUUUCAUCGAAACCGAUUUGAAAAAAUAUCGCUGCGUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCUUGGGUGGCACAAUAAA ............((((((-...((((((...(((((((((....)))..)))))).........((((((((.((((.(((...))).)))).)))))))))))))).))))))...... ( -42.80) >consensus UCG__GAAUUCAGUGCCGAAAAGCAUGCAAAUUUCCAUCGAAAGCGAU__UGGAAAACUUCGCCGCUUGCGUCACUGUCUUUUUGAGUUGGUUGCGCAUGCGCGUGGGUGGCACAAUAAA ............((((((.....(((((...(((((((((....))))...)))))........((.(((((.((((.(((...))).)))).))))).)))))))..))))))...... (-31.55 = -31.00 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006