Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,459,277 – 4,459,374 |
Length | 97 |
Max. P | 0.881875 |
Location | 4,459,277 – 4,459,374 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.28 |
Mean single sequence MFE | -23.77 |
Consensus MFE | -17.97 |
Energy contribution | -19.87 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.07 |
Mean z-score | -2.39 |
Structure conservation index | 0.76 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4459277 97 + 22224390 GUUUUGUACUUAAACGACUGAUAUGCAGCACCAUAUCAGCGUGACGUUUUGAGUUCUUAAAAAAUGAUAAUUCAACAAUGAUUUGAUACGAAAUUUC--------- ((((((((.(((((((.((((((((......)))))))))))..(((((((((((.(((.....))).))))))).))))..))))))))))))...--------- ( -23.60) >DroSec_CAF1 60851 101 + 1 AUUUCGUACUGAAACGACUGAUAUGCAGCUCCAUAUCAGCGUGAUGU-----GUUCUUAAAACAUGAUAUUUCAACAAUCAUUUGUGACGAAAUUUCAUUUUGUUA (((((((..(((((((.((((((((......)))))))))))...((-----(((.....))))).....))))((((....)))).)))))))............ ( -22.20) >DroSim_CAF1 66058 106 + 1 GUUUCGUACUGAAACGACUGAUAUGCAGCUCCAUAUCAGCGUGAUGUUUUGAGUUCUUAAAACAUGAUAUUUAAACAAUCAUUUGUGACGAAAUUUCAUUUUGUUA (((((.....)))))(.((((((((......)))))))))((.(((((((((....))))))))).))......((((....))))((((((((...)))))))). ( -25.50) >consensus GUUUCGUACUGAAACGACUGAUAUGCAGCUCCAUAUCAGCGUGAUGUUUUGAGUUCUUAAAACAUGAUAUUUCAACAAUCAUUUGUGACGAAAUUUCAUUUUGUUA (((((((......(((.((((((((......))))))))))).(((((((((....)))))))))......................)))))))............ (-17.97 = -19.87 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:05 2006