Locus 1547

Sequence ID X_DroMel_CAF1
Location 4,455,862 – 4,455,973
Length 111
Max. P 0.954997
window2533 window2534

overview

Window 3

Location 4,455,862 – 4,455,973
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.67
Mean single sequence MFE -24.92
Consensus MFE -18.34
Energy contribution -18.54
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.58
Structure conservation index 0.74
SVM decision value 0.15
SVM RNA-class probability 0.607444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4455862 111 + 22224390
ACACUUGAGUAAAUAUCAACAUCAGCAACCAGCCAAGACGA---UGUCUCCAACCUCAUCGCAACGCC------UUUCUUGGCUGGUGACAAUAACCCAAAACCUAAUGAGCAAUGUAUU
.....(((.......)))((((..((.((((((((((((((---((..........))))).......------..)))))))))))..........((........)).)).))))... ( -24.20)
>DroSec_CAF1 57340 114 + 1
ACACUUGAGUAAAUAUCAACAUCAGCAACCAGCCAAGACGAUGAUGUCUCCAACCUCAUCGCAACGCC------UUUCUUGGCUGGUGACAAUAACCCAAAACCUAAUGAGCAACGUAUU
....((((.......)))).....((.(((((((((((((((((.((.....)).)))))).......------..)))))))))))..........((........)).))........ ( -26.70)
>DroSim_CAF1 58582 114 + 1
ACACUUGAGUAAAUAUCAACAUCAGCAACCAGCCAAGACGAUGAUGUCUCCAACCUCAUCGCAACGCC------UUUCUUGGCUGGUGACAAUAACCCAAAACCUAAUGAGCAAUGUAUU
.....(((.......)))((((..((.(((((((((((((((((.((.....)).)))))).......------..)))))))))))..........((........)).)).))))... ( -27.30)
>DroEre_CAF1 59259 111 + 1
ACACUUGAGUAAAUAUCAACAUCAGCAACCAGCCAAGACGA---UGUCUCCAACCUCAUCGCAACGCC------UUUCUUGGCUGAUGACAAUAACCCAAAACCUAAUGAGCAAUGUAUU
.....(((.......)))((((..((...((((((((((((---((..........))))).......------..)))))))))............((........)).)).))))... ( -19.60)
>DroYak_CAF1 57930 117 + 1
ACACUUGAGUAAAUAUCAACAUCAGCAACCAGCCAAGACGA---UGUCUCCAACCUCAUCGCAACGCCUUUGCCUUUCUUGGCUGGUGACAAUAACCCAAAACCUAAUGAGCAAUGUAUU
.....(((.......)))((((..((.(((((((((((.((---((..........))))((((.....))))...)))))))))))..........((........)).)).))))... ( -26.80)
>consensus
ACACUUGAGUAAAUAUCAACAUCAGCAACCAGCCAAGACGA___UGUCUCCAACCUCAUCGCAACGCC______UUUCUUGGCUGGUGACAAUAACCCAAAACCUAAUGAGCAAUGUAUU
....((((.......)))).....((.(((((((((((.((...((....))...))...((...)).........)))))))))))..........((........)).))........ (-18.34 = -18.54 +   0.20)

alignment

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secondary structure

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dotplot

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Window 4

Location 4,455,862 – 4,455,973
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.67
Mean single sequence MFE -32.72
Consensus MFE -31.90
Energy contribution -31.74
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.97
SVM decision value 1.45
SVM RNA-class probability 0.954997
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4455862 111 - 22224390
AAUACAUUGCUCAUUAGGUUUUGGGUUAUUGUCACCAGCCAAGAAA------GGCGUUGCGAUGAGGUUGGAGACA---UCGUCUUGGCUGGUUGCUGAUGUUGAUAUUUACUCAAGUGU
.((((...(((.....))).((((((...(((((((((((((((..------(((.((.....)).)))(....).---...))))))))))).((....)).))))...)))))))))) ( -30.70)
>DroSec_CAF1 57340 114 - 1
AAUACGUUGCUCAUUAGGUUUUGGGUUAUUGUCACCAGCCAAGAAA------GGCGUUGCGAUGAGGUUGGAGACAUCAUCGUCUUGGCUGGUUGCUGAUGUUGAUAUUUACUCAAGUGU
.((((...(((.....))).((((((...(((((((((((((((..------.((...))(((((...((....))))))).))))))))))).((....)).))))...)))))))))) ( -35.40)
>DroSim_CAF1 58582 114 - 1
AAUACAUUGCUCAUUAGGUUUUGGGUUAUUGUCACCAGCCAAGAAA------GGCGUUGCGAUGAGGUUGGAGACAUCAUCGUCUUGGCUGGUUGCUGAUGUUGAUAUUUACUCAAGUGU
.((((...(((.....))).((((((...(((((((((((((((..------.((...))(((((...((....))))))).))))))))))).((....)).))))...)))))))))) ( -35.40)
>DroEre_CAF1 59259 111 - 1
AAUACAUUGCUCAUUAGGUUUUGGGUUAUUGUCAUCAGCCAAGAAA------GGCGUUGCGAUGAGGUUGGAGACA---UCGUCUUGGCUGGUUGCUGAUGUUGAUAUUUACUCAAGUGU
.((((...(((.....))).((((((...(((((((((((((((..------(((.((.....)).)))(....).---...))))))))))).((....)).))))...)))))))))) ( -28.10)
>DroYak_CAF1 57930 117 - 1
AAUACAUUGCUCAUUAGGUUUUGGGUUAUUGUCACCAGCCAAGAAAGGCAAAGGCGUUGCGAUGAGGUUGGAGACA---UCGUCUUGGCUGGUUGCUGAUGUUGAUAUUUACUCAAGUGU
.((((...(((.....))).((((((...(((((((((((((((...((((.....)))).....(((.(....))---)).))))))))))).((....)).))))...)))))))))) ( -34.00)
>consensus
AAUACAUUGCUCAUUAGGUUUUGGGUUAUUGUCACCAGCCAAGAAA______GGCGUUGCGAUGAGGUUGGAGACA___UCGUCUUGGCUGGUUGCUGAUGUUGAUAUUUACUCAAGUGU
.((((...(((.....))).((((((...(((((((((((((...........((...))(((((...((....))...)))))))))))))).((....)).))))...)))))))))) (-31.90 = -31.74 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:04 2006