Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,455,127 – 4,455,316 |
Length | 189 |
Max. P | 0.938328 |
Location | 4,455,127 – 4,455,247 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.48 |
Mean single sequence MFE | -27.66 |
Consensus MFE | -25.34 |
Energy contribution | -25.70 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.48 |
Structure conservation index | 0.92 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4455127 120 - 22224390 UUUCCAGAGUGUUGUUUUCCCAGCGACAACACAGACAUCUCUCGAUCGCACCAUCAUCAUCUUCAUUAUUGUCAUCAUGGUAAACGAUGAUCGUCAUCGAUGUCGACCCAAACCUGACGG ....(((.((((((((........)))))))).((((((...((((((((((((...((..........)).....)))))....).)))))).....)))))).........))).... ( -27.70) >DroSec_CAF1 56524 116 - 1 UUUCCAGAGUGUUGUUUUCCCAGCGACAACACAGACAUCUCUCGAUCGCACCAU---CAUCUUCAUUAUUGUCAUCGUGGUAACCGAUGAUCGUCAUCGAUGUCGACCCA-ACCUGACGA ....(((.((((((((........)))))))).((((((...((((((((((((---.((...((....))..)).)))))....).)))))).....))))))......-..))).... ( -29.30) >DroSim_CAF1 57857 119 - 1 UUUCCAGAGUGUUGUUUUCCCAGCGACAACACAGACAUCUCUCGAUCGCACCAUCAUCAUCUUCAUUAUUGUCAUCGUGGUAACCGAUGAUCGUCAUCGAUGUCGACCCA-ACCUGACGG ....(((.((((((((........)))))))).((((((....(((......)))...............(((((((.(....)))))))).......))))))......-..))).... ( -28.90) >DroEre_CAF1 58526 119 - 1 UUUCCACAGUGUUGUUUUCCCAGCGACAACACAGACAUCUCUCGAUCGCACCAUCAUCAUCUUCAUUAUUGUCAUCAUGGUAACCGAUGAUCGUCAUCGAUGUCGACCCA-ACCUGACGG ...((...((((((((........)))))))).((((((...((((((((((((...((..........)).....)))))....).)))))).....))))))......-.......)) ( -26.10) >DroYak_CAF1 57203 119 - 1 UUUCCAGAGUUGUGUUUUCCCAGCGACAACACAGACAUCUCCCGAUCGCACCAUCAUCAUCUUCAUUAUUGUCAUCAUGGUAACCGAUGAUCGUCAUCGAUGUCGACCCA-ACCUGCUGG ...((((((.((((((.((.....)).))))))((((((..........(((((...((..........)).....)))))....((((.....))))))))))......-..)).)))) ( -26.30) >consensus UUUCCAGAGUGUUGUUUUCCCAGCGACAACACAGACAUCUCUCGAUCGCACCAUCAUCAUCUUCAUUAUUGUCAUCAUGGUAACCGAUGAUCGUCAUCGAUGUCGACCCA_ACCUGACGG ....(((.((((((((........)))))))).((((((...((((((((((((...((..........)).....)))))....).)))))).....)))))).........))).... (-25.34 = -25.70 + 0.36)
Location | 4,455,207 – 4,455,316 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -21.11 |
Energy contribution | -21.42 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.18 |
Structure conservation index | 0.79 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4455207 109 + 22224390 AGAUGUCUGUGUUGUCGCUGGGAAAACAACACUCUGGAAACAAGAAAAAGUGACGAGACAAGGCGCGGCGAGACGGGACGGCAUCGAGAUGCAAUAAUCGAUAAUAGGA .(((((((((.(((((((((((.........)))((....))......)))))))).))).(.(.((......)).).)))))))..(((......))).......... ( -28.50) >DroSec_CAF1 56600 99 + 1 AGAUGUCUGUGUUGUCGCUGGGAAAACAACACUCUGGAAACAAGAAAAAGUGACGAGACAA----------GACGGGACGGCAACGAGAUGCAAUAAUCGAUAAUAGGA ...(((((((.(((((((((((.........)))((....))......)))))))).)).)----------))))...((....)).(((......))).......... ( -25.30) >DroSim_CAF1 57936 98 + 1 AGAUGUCUGUGUUGUCGCUGGGAAAACAACACUCUGGAAACAAGAA-AAGUGACGAGACAA----------GACGGGACGGCAACGAGAUGCAAUAAUCGAUAAUAGGA ...(((((((.(((((((((((.........)))((....))....-.)))))))).)).)----------))))...((....)).(((......))).......... ( -25.30) >DroYak_CAF1 57282 103 + 1 AGAUGUCUGUGUUGUCGCUGGGAAAACACAACUCUGGAAACAAGA-AAAGUGACGAGACGAGUC-----GGGACGGGACGGCAUCGAGAUGCAAUAAUCGAUAAUAGGA .(((((((((.(((((((((((.........)))((....))...-..)))))))).))).(((-----.......)))))))))..(((......))).......... ( -27.40) >consensus AGAUGUCUGUGUUGUCGCUGGGAAAACAACACUCUGGAAACAAGAAAAAGUGACGAGACAA__________GACGGGACGGCAACGAGAUGCAAUAAUCGAUAAUAGGA .(((((((((.(((((((((((.........)))((....))......)))))))).)))...........(......)))))))..(((......))).......... (-21.11 = -21.42 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:02 2006