Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,454,458 – 4,454,578 |
Length | 120 |
Max. P | 0.800441 |
Location | 4,454,458 – 4,454,578 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.75 |
Mean single sequence MFE | -32.16 |
Consensus MFE | -28.24 |
Energy contribution | -28.88 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.47 |
Structure conservation index | 0.88 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.800441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4454458 120 + 22224390 GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA (((....((((....((((...((((((((((((((.((((.....))))....(((......)))..))))))..))))))))))))..(((((.......))))).....))))))). ( -34.80) >DroSec_CAF1 55880 120 + 1 GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA (((....((((....((((...((((((((((((((.((((.....))))....(((......)))..))))))..))))))))))))..(((((.......))))).....))))))). ( -34.80) >DroSim_CAF1 57212 120 + 1 GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGACGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA (((....((((....((((...((((((((((((((.((((.....)))).....((......))...))))))..))))))))))))..(((((.......))))).....))))))). ( -33.50) >DroEre_CAF1 57804 119 + 1 GUGAAAAUAGGCCCCACGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCG-AAAAUACACCUUUUGCACCACCUACGCA (((....((((..........(((((((((((((((.((((.....))))....(((......)))..))))))..)))))))))....((-(((.......))))).....))))))). ( -30.90) >DroYak_CAF1 56521 119 + 1 GUGAAAAUAGGCCCCACGAUAAGGAAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAGGCACCGAACCACCUCCCACAUUCCCUCGCCCU-CAAACACACCUUUUGCACCACCUACGCA (((....((((.....(((...(((((((.((((((.((((.....))))....(((......)))..)))))).))).)))).)))....-((((.......)))).....))))))). ( -26.80) >consensus GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA (((......((....((((...((((((((((((((.((((.....))))....(((......)))..))))))..))))))))))))))......)))......(((.........))) (-28.24 = -28.88 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:01 2006