Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,451,521 – 4,451,632 |
Length | 111 |
Max. P | 0.992709 |
Location | 4,451,521 – 4,451,632 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.68 |
Mean single sequence MFE | -49.96 |
Consensus MFE | -33.72 |
Energy contribution | -35.40 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.09 |
Mean z-score | -3.66 |
Structure conservation index | 0.67 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4451521 111 + 22224390 GGGGU---GGGUGUGCCGGUUGCUGGGCGUUCGGGCGGUAUUAUUCAUGGCGCCUAAACAGCUUUGGGCAAACACCUCCCAGUAAUGCCACCACCC------CCCCUCAAAAUGUCUAUA ((((.---(((((((.((.((((((((.(((..((((.(((.....))).))))..))).((.....))........)))))))))).)).)))))------)))).............. ( -46.10) >DroSec_CAF1 52988 116 + 1 GGGGU---GGGUGUGCCGGUUGCUGGGCGUUUGGGCGGCAUUAUUCAUGGCGCCUA-ACAGCUUUGGGCAAACACCUCCCAGUAAUGCCACCACACCCCCCACCCCCCAGAAUGUCUAUA (((((---(((((((..((((((((((.(.(((((((.(((.....))).))))))-)..((.....))......).)))))))..)))..)))))))...))))).............. ( -50.10) >DroSim_CAF1 54326 116 + 1 GGGGU---GGGUGUGCCGGUUGCUGGGCGUUUGGGCGGCAUUAUUCAUGGCGCCUAAACAGCUUUGGGCAAACACCUCCCAGUAAUGCCACCACACA-CCCACCCCCCAGAAUGUCUAUA (((((---(((((((..((((((((((.(((((((((.(((.....))).))))))))).((.....))........)))))))..)))....))))-)))))))).............. ( -58.90) >DroEre_CAF1 54953 99 + 1 GGGGGAGGGGCUGUGUCGGUUGCUGGGCGAUCGGGCGGCAUUAUUCAUGGCGCCUAGACAGCUUUGGGC-----------AGUAAUGCCACC--------C--CCCCUAGAAUGUCUAUA (((((.((((((((..(((((((...)))))))((((.(((.....))).))))...)))))....(((-----------(....)))).))--------)--)))))............ ( -47.20) >DroYak_CAF1 53664 109 + 1 GGGGU---GGGUGUGUCGGUUGCUGGACGAUCGGGCGGCAUUAUUCAUGGCGCCUAAACAGCUUUGGGCAAACACCUCCCAGUAAUGCCACC--------CACCCCCUAGAAUGUCUAAA (((((---(((((.((..((((((((......(((((.(((.....))).))))).....((.....)).........))))))))))))))--------)))))).(((.....))).. ( -47.50) >consensus GGGGU___GGGUGUGCCGGUUGCUGGGCGUUCGGGCGGCAUUAUUCAUGGCGCCUAAACAGCUUUGGGCAAACACCUCCCAGUAAUGCCACCAC_C____CACCCCCCAGAAUGUCUAUA (((((....((((.((..(((((((((.(((.(((((.(((.....))).))))).))).((.....))........))))))))))))))).........))))).............. (-33.72 = -35.40 + 1.68)
Location | 4,451,521 – 4,451,632 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.68 |
Mean single sequence MFE | -44.12 |
Consensus MFE | -26.94 |
Energy contribution | -28.30 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.36 |
Structure conservation index | 0.61 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4451521 111 - 22224390 UAUAGACAUUUUGAGGGG------GGGUGGUGGCAUUACUGGGAGGUGUUUGCCCAAAGCUGUUUAGGCGCCAUGAAUAAUACCGCCCGAACGCCCAGCAACCGGCACACCC---ACCCC ..............((((------(((((...((....(((((.(((....))).......(((..((((..((.....))..))))..))).)))))......)).)))))---.)))) ( -40.20) >DroSec_CAF1 52988 116 - 1 UAUAGACAUUCUGGGGGGUGGGGGGUGUGGUGGCAUUACUGGGAGGUGUUUGCCCAAAGCUGU-UAGGCGCCAUGAAUAAUGCCGCCCAAACGCCCAGCAACCGGCACACCC---ACCCC ..(((.....))).((((((((((((((((((((((((.(.(..((((((((..((....)).-)))))))).).).))))))))))...)))))).((.....))...)))---))))) ( -52.00) >DroSim_CAF1 54326 116 - 1 UAUAGACAUUCUGGGGGGUGGG-UGUGUGGUGGCAUUACUGGGAGGUGUUUGCCCAAAGCUGUUUAGGCGCCAUGAAUAAUGCCGCCCAAACGCCCAGCAACCGGCACACCC---ACCCC ..(((.....))).((((((((-(((((((((((((((.(.(..((((((((..((....))..)))))))).).).)))))))))).....((...)).....))))))))---))))) ( -53.00) >DroEre_CAF1 54953 99 - 1 UAUAGACAUUCUAGGGG--G--------GGUGGCAUUACU-----------GCCCAAAGCUGUCUAGGCGCCAUGAAUAAUGCCGCCCGAUCGCCCAGCAACCGACACAGCCCCUCCCCC ..(((.....)))((((--(--------((.(((......-----------((.....))((((..((((.(((.....))).)))).....((...))....))))..)))))))))). ( -33.90) >DroYak_CAF1 53664 109 - 1 UUUAGACAUUCUAGGGGGUG--------GGUGGCAUUACUGGGAGGUGUUUGCCCAAAGCUGUUUAGGCGCCAUGAAUAAUGCCGCCCGAUCGUCCAGCAACCGACACACCC---ACCCC .((((.....))))((((((--------(((((((.((((....))))..))).....((((.(..((((.(((.....))).))))..).....))))........)))))---))))) ( -41.50) >consensus UAUAGACAUUCUGGGGGGUG____G_GUGGUGGCAUUACUGGGAGGUGUUUGCCCAAAGCUGUUUAGGCGCCAUGAAUAAUGCCGCCCGAACGCCCAGCAACCGGCACACCC___ACCCC ..(((.....)))((((...........((((((((((......((((((((..((....))..)))))))).....)))))))))).....(((........)))..........)))) (-26.94 = -28.30 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:55 2006