Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,450,658 – 4,450,893 |
Length | 235 |
Max. P | 0.749022 |
Location | 4,450,658 – 4,450,776 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -19.88 |
Energy contribution | -20.40 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.14 |
Mean z-score | -1.48 |
Structure conservation index | 0.82 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4450658 118 - 22224390 AAACCCAGCCAGCCAAAAUAUCAGCCCCUUUCGGGUU--CGGUGGUAAUACGAGAAGCCCACCAAAAACCCAUCAUCGAAGUCCACAUAGAAUUCGAGUACCAAAAAACUGCAUUGGCAA ...........(((((.....(((........(((((--.(((((.............)))))...)))))....(((((.((......)).)))))...........)))..))))).. ( -26.12) >DroSec_CAF1 52132 120 - 1 AAACCCAGGCAGCCAAAAUAUCAGCCCCUUUCGGGUUCUCGGUGGUAAUACGAGAAGCCCACCAAAAACCCAUCAUCGAAGUCCACAUAGAAUUCGAGUACCAAAAAAGUGCAUUGCCAA .......(((((....................(((((...(((((.............)))))...)))))....(((((.((......)).)))))((((.......)))).))))).. ( -28.42) >DroSim_CAF1 53469 120 - 1 AAACCCAGGCAGCCAAAAUAUCAGCCCCUUUCGGGUUCUCGGUGGUAAUACGAGAAGCCCACCAAAAACCCAUCAUCGAAGUCCACAUAGAAUUCGAGUACCAAAAAAGUGCAUUGCCAA .......(((((....................(((((...(((((.............)))))...)))))....(((((.((......)).)))))((((.......)))).))))).. ( -28.42) >DroEre_CAF1 54114 118 - 1 AAACCCAACCAUCCAAAAUAUCAGCCCCUUUCGGGUU--CGUUGGUAAUACGAGAAGCCCACCAAAAACCCAUCAUCGAAGUCCACAUAGAAUUCGAGUACCAGAAAACUGCAUUGCCAA .......................((...(((((((((--..(((((..............))))).)))))....(((((.((......)).)))))......))))...))........ ( -19.64) >DroYak_CAF1 52802 118 - 1 AAACCCAACCAUCCAAAAUAUCAGCCCCUUUCGGGUU--CGGUGGUAAUACGAGAAGCCCACUAAAAACCUAUCAUCGAAGUCCACAUAGAAUUCGAGUACCAGAAAACUGCAUUGCCAA ...................((((((((.....)))))--.)))((((((..........................(((((.((......)).)))))....(((....))).)))))).. ( -18.40) >consensus AAACCCAGCCAGCCAAAAUAUCAGCCCCUUUCGGGUU__CGGUGGUAAUACGAGAAGCCCACCAAAAACCCAUCAUCGAAGUCCACAUAGAAUUCGAGUACCAAAAAACUGCAUUGCCAA .......((((.....................(((((...(((((.............)))))...)))))....(((((.((......)).))))).................)))).. (-19.88 = -20.40 + 0.52)
Location | 4,450,776 – 4,450,893 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.04 |
Mean single sequence MFE | -25.27 |
Consensus MFE | -22.90 |
Energy contribution | -23.23 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.91 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4450776 117 + 22224390 UGACUUCCACUUGAGUGAGCGCUUUUUUCUCUCUGGCCAAAUUCGCUGAUUCUGUGCAAAAGUCAAUUGCGUCUGUAGAUGUAUAUAUAUGUACACUUAUAAAUAUAUACACAUAAC ((((((.(((..((((.((((..(((..((....))..)))..)))).)))).)))...)))))).((((....)))).(((((((((.((((....)))).)))))))))...... ( -26.60) >DroSec_CAF1 52252 111 + 1 UGACUUCCACAUGAGUGAGCGCUUUUUUCUCUCUGGCCAAAUUCGCUGAUUCUGUGCAAAAGUCAAUUGCGUCUGUAGAUGUACAUAU------ACCUAUAAAUAUAUAUAAAUAAC ((((((.((((.((((.((((..(((..((....))..)))..)))).))))))))...))))))..((((((....)))))).....------....................... ( -24.60) >DroSim_CAF1 53589 111 + 1 UGACUUCCACAUGAGUGAGCGCUUUUUUCUCUCUGGCCAAAUUCGCUGAUUCUGUGCAAAAGUCAAUUGCGUCUGUAGAUGUACACAU------ACCUAUAAAUAUAUACACAUAAC ((((((.((((.((((.((((..(((..((....))..)))..)))).))))))))...))))))..((((((....)))))).....------....................... ( -24.60) >consensus UGACUUCCACAUGAGUGAGCGCUUUUUUCUCUCUGGCCAAAUUCGCUGAUUCUGUGCAAAAGUCAAUUGCGUCUGUAGAUGUACAUAU______ACCUAUAAAUAUAUACACAUAAC ((((((.((((.((((.((((..(((..((....))..)))..)))).))))))))...))))))..((((((....)))))).................................. (-22.90 = -23.23 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:53 2006