Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,446,607 – 4,446,712 |
Length | 105 |
Max. P | 0.916244 |
Location | 4,446,607 – 4,446,712 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -24.14 |
Energy contribution | -23.98 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.86 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4446607 105 + 22224390 UUGCCUGCCACCCUCGCAGCGACUCACCUGUGCACCC--CCUG---------CACC---CCCUGCACCAACGCCAACCCCCUU-UUUCUCCACUUGGCACGCAGCGGGGCCUUCAGUUAG ....(((....((((((.(((........(((((...--..))---------))).---............(((((.......-.........))))).))).))))))....))).... ( -27.29) >DroSec_CAF1 48237 105 + 1 UUGCCUGCCACCCUCGCUGCGACUCACCUGUGCACCC--CCGG---------CACC---CCCUGCACCAACGCCAACCCCCUU-UUUCUCCACUUGGCACGCAGCGGGGCCUUCAGUUAG ....(((....((((((((((........(((((...--..((---------....---.)))))))....(((((.......-.........))))).))))))))))....))).... ( -31.89) >DroSim_CAF1 49458 105 + 1 UUGCCUGCCACCCUCGCCGCGACUCACCUGUGCACCC--CCGG---------CACC---CCCUGCACCAACGCCAACCCCCUU-UUUCUCCACUUGGCACGCAGCGGGGCCUUCAGUUAG ....(((....((((((.(((........(((((...--..((---------....---.)))))))....(((((.......-.........))))).))).))))))....))).... ( -27.29) >DroEre_CAF1 50075 114 + 1 UUGCCUGCCACCCUCGCCGCGACUCACCUGUGCACCCCC---UAACCCCCUACACC---CCCUGCACCACCGCCAACCCCCUUUUUUCUCCACCUGGCACGCAGCGGGGCCUUCAGUUAG ....(((....((((((.(((........(((((.....---..............---...)))))....((((...................)))).))).))))))....))).... ( -25.46) >DroYak_CAF1 48832 119 + 1 UUGCCUGCCACCCUCGCCGCGGCUCACCUGUGCACCUCCCCUGCACCCCCAGCACCAGCACCAGCACCACCGCCAAUCCCCUU-UUUCUCCACCUGGCACGCAGCGGGGCCUUUAGUUAG ....(((....((((((.((((((.....(((((.......))))).....((....))...)))......((((........-..........)))).))).))))))....))).... ( -29.07) >consensus UUGCCUGCCACCCUCGCCGCGACUCACCUGUGCACCC__CCGG_________CACC___CCCUGCACCAACGCCAACCCCCUU_UUUCUCCACUUGGCACGCAGCGGGGCCUUCAGUUAG ....(((....((((((.(((........((((..............................))))....((((...................)))).))).))))))....))).... (-24.14 = -23.98 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:44 2006