Locus 153

Sequence ID X_DroMel_CAF1
Location 544,788 – 544,888
Length 100
Max. P 0.568842
window244

overview

Window 4

Location 544,788 – 544,888
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 91.00
Mean single sequence MFE -30.35
Consensus MFE -24.86
Energy contribution -25.93
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.82
SVM decision value 0.07
SVM RNA-class probability 0.568842
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 544788 100 - 22224390
AAAAAGUGGCGUAAGUGCAGCCGAUCGAUCGUUCGAAUUCAAAUUCGAUUUCGAGCGCGAGGGUUUUUCGUGUUGCCUUCUGUGCGGCUUUUCUUGUUUC
.((((((.(((.(((.((((((((..(((((((((((.((......)).)))))))).....)))..))).))))))))...))).))))))........ ( -31.70)
>DroSec_CAF1 7564 100 - 1
AAAAAGUGGCGUAAGUGCAGCCGAUCGAUCGUUCGAAUUCAAAUUCGAUUUCGAACGCGAGGGUUUUUCGUGUUGCCUUCUGUGCGGCUCUUCUUGUUUC
....(((.(((.(((.((((((((..(((((((((((.((......)).)))))))).....)))..))).))))))))...))).)))........... ( -29.00)
>DroSim_CAF1 8056 100 - 1
AAAAAGUGGCGUAAGUGCAGCCGAUCGAUCGUUCGAAUUCAAAUUCGAUUUCGAACGCGAGGGUUUUUCGUGUUGCCUUCUGUGCGGCUCUUCUUGUUUC
....(((.(((.(((.((((((((..(((((((((((.((......)).)))))))).....)))..))).))))))))...))).)))........... ( -29.00)
>DroYak_CAF1 12510 94 - 1
AGAAAAGCGAGUAAGUGCAGCCGAUUGAUCGUUCGAAUUCAAAUUCGA------ACGCGAGGGUUUAUCGGCCUGCCUUCUGUGCGGCUCUUCUUGUUUC
....(((((((.(((.((.((((((.((((((((((((....))))))------))).....))).)))))).((((....).))))).)))))))))). ( -31.70)
>consensus
AAAAAGUGGCGUAAGUGCAGCCGAUCGAUCGUUCGAAUUCAAAUUCGAUUUCGAACGCGAGGGUUUUUCGUGUUGCCUUCUGUGCGGCUCUUCUUGUUUC
...........((((...(((((......((((((((.((......)).)))))))).((((((..........))))))....)))))...)))).... (-24.86 = -25.93 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:22 2006