Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,440,222 – 4,440,342 |
Length | 120 |
Max. P | 0.632158 |
Location | 4,440,222 – 4,440,342 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -34.16 |
Consensus MFE | -31.46 |
Energy contribution | -31.62 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.15 |
Structure conservation index | 0.92 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4440222 120 - 22224390 ACUCCAUCACAAACCCAAAACGAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGGAAACAUUU .............(((..........((((........))))(((((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))).......)))........ ( -36.80) >DroSec_CAF1 41908 120 - 1 ACUCCAUCACAAACCCAAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAGUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGGAAAUAUUU .............(((..........((((........))))(((((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))).......)))........ ( -36.20) >DroSim_CAF1 43360 120 - 1 ACUCCAUCACAAACCCAAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGAAAAUAUUU ..(((.....................((((........))))(((((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))).......)))........ ( -34.70) >DroEre_CAF1 43744 120 - 1 ACUCCAUCACAAACCCGAAACCAACGGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGAUUGCGACUGCGGUGAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUACACAGAAAACAUUU ................(((.....(.((((........)))).)(((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))))................. ( -31.80) >DroYak_CAF1 42610 120 - 1 ACUCCAUCACAAACCCGAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGACGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACAGAAAACGUUU ......................(((.((((........))))(((((((.((((((..(((.((((.(((((....))))).))))))))))))))))))))..............))). ( -31.30) >consensus ACUCCAUCACAAACCCAAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGAAAACAUUU ..(((.....................((((........))))(((((((.((((((..(((.((((.(((((....))))).)))))))))))))))))))).......)))........ (-31.46 = -31.62 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:12 2006