Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,439,850 – 4,439,969 |
Length | 119 |
Max. P | 0.995371 |
Location | 4,439,850 – 4,439,969 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -33.24 |
Consensus MFE | -31.58 |
Energy contribution | -31.62 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.73 |
Structure conservation index | 0.95 |
SVM decision value | 2.57 |
SVM RNA-class probability | 0.995371 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4439850 119 + 22224390 GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUUAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCGUCUUCAUAUUUGGUUUUCCAAUA-CAAUCAUCAU (((((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))))........((((....))))..-.......... ( -33.10) >DroSec_CAF1 41639 111 + 1 GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA-UA-------- ..(((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))..-..-------- ( -32.30) >DroSim_CAF1 43090 111 + 1 GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA-UA-------- ..(((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))..-..-------- ( -32.30) >DroEre_CAF1 43399 119 + 1 GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA-CAAGCAUCAU (((((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))..-...))..... ( -34.70) >DroYak_CAF1 42380 120 + 1 GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCAUCAUAUUUGGUUUUCCAUCAUCAAGCAUCAU (((((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))...........(((....))).......))..... ( -33.80) >consensus GCGGUCUUGGCCCGGUCAAAAAAUCGUUGAGCCGUUGAGUUGGUUCAGAUCUGUGAAAAGCAUAUUUUGACAUGGCCCAUGGAUCUUCUUCAUAUUUGGUUUUCCAAUA_CAA_CAUCAU ..(((((.((((..(((((((.....((((((((......))))))))...((((.....)))))))))))..))))...)))))..........((((....))))............. (-31.58 = -31.62 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:11 2006