Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,438,543 – 4,438,663 |
Length | 120 |
Max. P | 0.750920 |
Location | 4,438,543 – 4,438,663 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.15 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -21.78 |
Energy contribution | -22.02 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.87 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.750920 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4438543 120 - 22224390 CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUAAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGCCUGG ....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))........................(((.((.....))))) ( -25.00) >DroSec_CAF1 40352 119 - 1 CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGUC-GG ....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))............(((.....((......)).....))-). ( -26.20) >DroSim_CAF1 41784 119 - 1 CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGUC-GG ....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))............(((.....((......)).....))-). ( -26.20) >DroEre_CAF1 42019 119 - 1 CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAGGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGCC-GG ...((((((.((((.(((((((...........)))).)))............((((((....))))))..))))))))))...................((......)).......-.. ( -26.80) >DroYak_CAF1 41057 119 - 1 CAACGUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUGCUUCUUGAUGGAAAUUAGGCAGCCAGUAAAAGAAAAUGAAAACGAAAACACCAUCUAAGGAAAAGCC-GG ..........((((.(((((((...........)))).))).(((....(((.((((((....)))))).)))((...........))...)))......((......))....)))-). ( -21.30) >consensus CAACUUCACAUGGCAUGCGAUCUCGAAAUUAAUGAUCAGCAACGUAAUUACUUCUUGAUGGAAAUUAGGCAGCCAGUGAAAGAAAAUGAAAACGAAAACACCAUCCAAGGAAAAGCC_GG ....(((((.((((.(((((((...........)))).)))............((((((....))))))..)))))))))....................((......)).......... (-21.78 = -22.02 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:10 2006