Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,438,141 – 4,438,334 |
Length | 193 |
Max. P | 0.996549 |
Location | 4,438,141 – 4,438,261 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.66 |
Mean single sequence MFE | -27.16 |
Consensus MFE | -21.07 |
Energy contribution | -21.67 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.78 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4438141 120 + 22224390 CGAGCGUUCCCAAGCUCCCCCAGGUCUCGUCUUCAAGUUCCCAGGUUGUUCUCCCUGAUUUUGCUCACAUAAGACCAAGAAUUUUCUUUAUGACAAUUCAUUUGUUCAAUGGGAAUCUUU .((((........)))).(((((((((.((...((((....((((........))))..))))...))...)))))..(((((.((.....)).)))))..........))))....... ( -27.50) >DroSec_CAF1 39953 120 + 1 CGAGCGUUCCCAAGCUCCCCCAGGUCUCGUCUUCGAGUUCCCAGGUUGUUCUCCCAGCUUUUGCUCACAUAAGACCAAGAAUUUUCUUUAUGACAAUUCAUUUGUUCAAUGGGAAUCUUU .((((........)))).(((((((((..(....((((....((((((......))))))..))))..)..)))))..(((((.((.....)).)))))..........))))....... ( -31.10) >DroSim_CAF1 41385 120 + 1 CGAGCGUUCCCAAGCUCCCCCAGGUCUCGUCUUCGAGUUCCCAGGUUGUUCUCCCAGCUUUUGCUCACAUAAGACCAAGAAUUUUCUUUAUGACAAUUCAUUUGUUCAAUGGGAAUCUUU .((((........)))).(((((((((..(....((((....((((((......))))))..))))..)..)))))..(((((.((.....)).)))))..........))))....... ( -31.10) >DroEre_CAF1 41561 119 + 1 CGAGCGUUCCCAAGCUCCCUGA-GUUUCGUCUUUAAGUUCCCAGCUUGUUCUCCCUGCUUUUGCUCACAUAAGACCAAGAAUUUUCUUUAUGACAAUUCAUUUGUUCAAUGGGAAUCUUU .(((.((((((((((....(((-(((..(((...(((.......((((.(((....((....)).......))).))))......)))...)))))))))...)))...)))))))))). ( -23.72) >DroYak_CAF1 40575 119 + 1 CGAGCGUUCCCAAGCUCCCUGA-GUUUCGUCUUCCAGUUCCCAGCUUGUUCUCCCUGCUUUUGCUCACAUAAGACCAAGAAUUUUCUUUAUGACAAUUCAUUUGUUCAAUGGGAAUCUUU .((((........)))).....-.............(((((((.((((.(((....((....)).......))).))))...........((((((.....))).))).))))))).... ( -22.40) >consensus CGAGCGUUCCCAAGCUCCCCCAGGUCUCGUCUUCAAGUUCCCAGGUUGUUCUCCCUGCUUUUGCUCACAUAAGACCAAGAAUUUUCUUUAUGACAAUUCAUUUGUUCAAUGGGAAUCUUU .((((........))))...................(((((((((((.........((....))........))))..(((((.((.....)).)))))..........))))))).... (-21.07 = -21.67 + 0.60)
Location | 4,438,221 – 4,438,334 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.85 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -29.12 |
Energy contribution | -28.56 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -1.90 |
Structure conservation index | 0.93 |
SVM decision value | 2.71 |
SVM RNA-class probability | 0.996549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4438221 113 - 22224390 CCUUUGUGAGGCGGGUUGCGCUGAGUCAGAAUUCAG-------AAGUUGGGGAGACAUUAUUUCGCCAUUAUGCAAGCCAAAAGAUUCCCAUUGAACAAAUGAAUUGUCAUAAAGAAAAU .((((((((.(.((.(((((((((((....))))))-------....(((.((((.....)))).)))...))))).))..........((((.....))))...).))))))))..... ( -30.00) >DroSec_CAF1 40033 113 - 1 CCUUUGUGAGGCGGGUUGCGCUGAGUCAGAAUUCAG-------AAGUUGGGGAGACAUUAUUUCGCCAUUAUGCAAGCCAAAAGAUUCCCAUUGAACAAAUGAAUUGUCAUAAAGAAAAU .((((((((.(.((.(((((((((((....))))))-------....(((.((((.....)))).)))...))))).))..........((((.....))))...).))))))))..... ( -30.00) >DroSim_CAF1 41465 113 - 1 CCUUUGUGAGGCGGGUUGCGCUGAGUCAGAACUCAG-------AAGUUGGGGAGACAUUAUUUCGCCAUUAUGCAAGCCAAAAGAUUCCCAUUGAACAAAUGAAUUGUCAUAAAGAAAAU .((((((((.(.((.(((((((((((....))))))-------....(((.((((.....)))).)))...))))).))..........((((.....))))...).))))))))..... ( -32.30) >DroEre_CAF1 41640 120 - 1 CCUUUGUGGCGCGGGUUGCGCUGAGUCAGAAUUCAGAAUUCCGAAGUUGGGGAGACAUUAUUUCGCCAUUAUGCAAGCCAAAAGAUUCCCAUUGAACAAAUGAAUUGUCAUAAAGAAAAU .(((((((((..((.(((((((((((....)))))).....((((((...(....)...))))))......))))).))..........((((.....))))....)))))))))..... ( -33.80) >DroYak_CAF1 40654 113 - 1 CCUUUGUGGCGCGGGUUGCGCUGAGUCAGAAUUUAG-------AAGUUGGGGAGACAUUAUUUCGCCAUUAUGCAAGCCAAAAGAUUCCCAUUGAACAAAUGAAUUGUCAUAAAGAAAAU .(((((((((..((.(((((((((((....))))))-------....(((.((((.....)))).)))...))))).))..........((((.....))))....)))))))))..... ( -30.50) >consensus CCUUUGUGAGGCGGGUUGCGCUGAGUCAGAAUUCAG_______AAGUUGGGGAGACAUUAUUUCGCCAUUAUGCAAGCCAAAAGAUUCCCAUUGAACAAAUGAAUUGUCAUAAAGAAAAU .((((((((...((.(((((((((((....))))))...........(((.((((.....)))).)))...))))).))..........((((.....)))).....))))))))..... (-29.12 = -28.56 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:09 2006