Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,437,118 – 4,437,222 |
Length | 104 |
Max. P | 0.569104 |
Location | 4,437,118 – 4,437,222 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.75 |
Mean single sequence MFE | -25.24 |
Consensus MFE | -17.98 |
Energy contribution | -18.94 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.10 |
Mean z-score | -1.36 |
Structure conservation index | 0.71 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4437118 104 - 22224390 GCCA-----ACAGACUGAUAGCUGCUAUCAGGCAAGAACUCUUCGAUUAGCUACAGUGGUCA-----------CUGACUACAAAGCUGAUGAGUAUGCAUUUAAUUGUAUGUAUACAAAU ....-----.....(((((((...)))))))...........((.(((((((...((((((.-----------..))))))..)))))))))((((((((........)))))))).... ( -29.00) >DroSec_CAF1 38965 95 - 1 GCCA-----ACAGACUGAUAGCUGCUAUCAGGCAAGAACUCUUCGAUUAGCUACAGUGCUCA-----------CUGACUACAAAGCUAAUGAGUAUGCAUUUAAUUGUAGG--------- .((.-----((((.(((((((...)))))))(((...((((....(((((((.((((....)-----------))).......))))))))))).)))......)))).))--------- ( -23.10) >DroSim_CAF1 40397 95 - 1 GCCA-----ACAGACUGAUAGCUGCUAUCAGGCAAGAACUCUUCGAUUAGCUACAGUGGCCA-----------CUGACUACAAAACUAAUGAGUAUGCAUUUAGUUGUAGG--------- (((.-----....((((.((((((((....)))(((....))).....))))))))))))..-----------....((((((....((((......))))...)))))).--------- ( -22.10) >DroEre_CAF1 40584 120 - 1 GCCAGACUGAUAGACUGAUAGCUGCUAUCAGCGAAGAACUCUUCGAUUAGCUACAGUGGUCACCACACAGCAACUGACUACAGAGCUAAUGAGUAUUUGUUUAAUUGUAGAUCAAUUUAU ...((((.((((..(((((((...)))))))(((((....)))))(((((((...(((((((............)))))))..)))))))...)))).))))(((((.....)))))... ( -30.40) >DroYak_CAF1 39596 115 - 1 GCCA-----ACAGACUGAUAGCUGCUAUCAACCAGGAACUCUUCGAUUAGCUACAGUUGUCACUACACUGCAACUGACUAUAGAGCUUAUGAGUAUUCGUUGCAUUGCAUAUCAAUAAAU ((((-----((..(((.((((((((((....(.(((....))).)..))))..((((((.((......)))))))).......))).))).)))....))))....))............ ( -21.60) >consensus GCCA_____ACAGACUGAUAGCUGCUAUCAGGCAAGAACUCUUCGAUUAGCUACAGUGGUCA___________CUGACUACAAAGCUAAUGAGUAUGCAUUUAAUUGUAGGU__A___AU .........((((.(((((((...)))))))......((((....(((((((...(((((((............)))))))..)))))))))))..........))))............ (-17.98 = -18.94 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:01 2006