Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,433,340 – 4,433,460 |
Length | 120 |
Max. P | 0.775556 |
Location | 4,433,340 – 4,433,460 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -23.90 |
Energy contribution | -25.38 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.09 |
Mean z-score | -1.75 |
Structure conservation index | 0.76 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4433340 120 + 22224390 GGGCUUUUGUCAGAUACGAUAGCCACAAGAUUUAGACAGAUAUGGCGAAAUAGCACCCAAUACGAAGGUGAUCUGUCAAAAAUCAGCUUUUGACGUACACAAAGUUAAUGAGGUGCUAUG .((((.((((.....)))).)))).........................((((((((((..((....(((...((((((((......))))))))..)))...))...)).)))))))). ( -31.80) >DroSec_CAF1 35713 120 + 1 GGACUUUUGCCAGAUACGAUAGCCACAAGAUCUAGACAUAUAUGGCGAAAUAGCACCCAAUACGAAGGUGAUCUGUCAAAAAUCAGCUUUUGACGUACACAAAGUUAAUAAGGUGCUAUG .....(((((((.(((.(.(((.........)))..).))).)))))))((((((((....((....(((...((((((((......))))))))..)))...))......)))))))). ( -29.60) >DroSim_CAF1 37065 120 + 1 GGACUUUUGCCAGAUACGAUAGCCACAAGAUCUAGACAGAUAUGGCGAAAUAGCACCCAAUACGAAGGUGAUCUGUCAAAAAUCAGCUUUUGACGUACACAAAGUUAAUGAGGUGCUAUG ((.(....)))..........((((....((((....)))).))))...((((((((((..((....(((...((((((((......))))))))..)))...))...)).)))))))). ( -31.90) >DroEre_CAF1 36622 119 + 1 -GGCUUUUGCCAGAUACGAUAGCCAGAAGAUCUAGACAGAUAUGGCGAAAUAGCACCCAAUAGGAAGGUGAUCUGUCAAAAAUCAGCUGUUGACGUACACAAAGUUUAUGAGGUGCUAUG -(((....)))..........((((....((((....)))).))))...((((((((..(((((...(((...((((((..........))))))..)))....)))))..)))))))). ( -34.80) >DroYak_CAF1 35834 120 + 1 UGGGUUUUUCCAGAUACGAUAGCCACAAGAUCUAGACAGAUAUGGCGAAAUAGCACCCACUACGAAGGUGAUCUUUCAAAAAUCAGCUGUUAACGUACUCGAUGUUUAUGAGGUGCUAUG ((((....)))).........((((....((((....)))).))))...((((((((......(((((....))))).....(((......(((((.....)))))..))))))))))). ( -28.50) >consensus GGGCUUUUGCCAGAUACGAUAGCCACAAGAUCUAGACAGAUAUGGCGAAAUAGCACCCAAUACGAAGGUGAUCUGUCAAAAAUCAGCUUUUGACGUACACAAAGUUAAUGAGGUGCUAUG .(((....)))..........((((....((((....)))).))))...((((((((((..((....(((...((((((((......))))))))..)))...))...)).)))))))). (-23.90 = -25.38 + 1.48)
Location | 4,433,340 – 4,433,460 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -23.41 |
Energy contribution | -24.09 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -1.67 |
Structure conservation index | 0.80 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775556 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4433340 120 - 22224390 CAUAGCACCUCAUUAACUUUGUGUACGUCAAAAGCUGAUUUUUGACAGAUCACCUUCGUAUUGGGUGCUAUUUCGCCAUAUCUGUCUAAAUCUUGUGGCUAUCGUAUCUGACAAAAGCCC .((((((((.((.((.....(((...((((((((....))))))))....))).....)).))))))))))...((((((.............))))))..................... ( -28.82) >DroSec_CAF1 35713 120 - 1 CAUAGCACCUUAUUAACUUUGUGUACGUCAAAAGCUGAUUUUUGACAGAUCACCUUCGUAUUGGGUGCUAUUUCGCCAUAUAUGUCUAGAUCUUGUGGCUAUCGUAUCUGGCAAAAGUCC .(((((((((...((.....(((...((((((((....))))))))....))).....))..)))))))))...((((.(((((..(((.((....))))).))))).))))........ ( -33.00) >DroSim_CAF1 37065 120 - 1 CAUAGCACCUCAUUAACUUUGUGUACGUCAAAAGCUGAUUUUUGACAGAUCACCUUCGUAUUGGGUGCUAUUUCGCCAUAUCUGUCUAGAUCUUGUGGCUAUCGUAUCUGGCAAAAGUCC .((((((((.((.((.....(((...((((((((....))))))))....))).....)).))))))))))...(((((((((....))))...)))))..........(((....))). ( -30.20) >DroEre_CAF1 36622 119 - 1 CAUAGCACCUCAUAAACUUUGUGUACGUCAACAGCUGAUUUUUGACAGAUCACCUUCCUAUUGGGUGCUAUUUCGCCAUAUCUGUCUAGAUCUUCUGGCUAUCGUAUCUGGCAAAAGCC- .(((((....((((.....))))........(((..(((((..((((((((((((.......)))))............))))))).)))))..)))))))).......(((....)))- ( -27.80) >DroYak_CAF1 35834 120 - 1 CAUAGCACCUCAUAAACAUCGAGUACGUUAACAGCUGAUUUUUGAAAGAUCACCUUCGUAGUGGGUGCUAUUUCGCCAUAUCUGUCUAGAUCUUGUGGCUAUCGUAUCUGGAAAAACCCA .((((((((.(((..........((((.....((.((((((.....)))))).)).)))))))))))))))...(((((((((....))))...)))))..........((......)). ( -26.40) >consensus CAUAGCACCUCAUUAACUUUGUGUACGUCAAAAGCUGAUUUUUGACAGAUCACCUUCGUAUUGGGUGCUAUUUCGCCAUAUCUGUCUAGAUCUUGUGGCUAUCGUAUCUGGCAAAAGCCC .((((((((.((........(((...((((((((....))))))))....)))........))))))))))...((((((.............))))))..................... (-23.41 = -24.09 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:53 2006