Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,432,762 – 4,432,876 |
Length | 114 |
Max. P | 0.619081 |
Location | 4,432,762 – 4,432,876 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.49 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -21.12 |
Energy contribution | -21.76 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -1.32 |
Structure conservation index | 0.84 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4432762 114 + 22224390 UCGAUCUAUAGCCCCAAAGAUAACCAACCAA----CCGACCGACCCACUGAUACGUUCGGGGGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUAC--A ........((((((.((((.(....).....----.((((.(((((.((((.....))))))))).))))...................))))))))))..(((((......)))))--. ( -28.20) >DroSec_CAF1 35113 120 + 1 UCGAUCUAUAGCCCCAAAGAUAACCAACCAACCAACCGACCGACCCACUGAUACGUCCGGGCGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUACACA ........((((((.((((.....((((.(((...(((..((...........))..)))..))).))))...................))))))))))..(((((......)))))... ( -22.35) >DroSim_CAF1 36471 120 + 1 UCGAUCUAUAGCCCCAAAGAUAACCAACCAACCGACCGACCGACCCACUGAUACGUCCGGGCGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUACACA ........((((((.(((((((((.(((...(((..((..((......))...))..)))..))).))))))..................)))))))))..(((((......)))))... ( -23.06) >DroEre_CAF1 36062 109 + 1 UCGAUCUAUAGCCCCAAAGAUAACCAACCGA--------CCGACCCACUGAUACGUCCGG-GGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUAC--A ........((((((.((((........(((.--------.((...........))..)))-((..((....))..))............))))))))))..(((((......)))))--. ( -24.10) >DroYak_CAF1 35256 114 + 1 UCGAUCUAUAGCCCCAAAGAUAACCAACCGA----CCGACCGACCCACUGAUACGUCCGGGGGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACUGUAC--A ........((((((.((((.....(....).----.((((.(((((.(((.......)))))))).))))...................))))))))))..((((........))))--. ( -27.30) >consensus UCGAUCUAUAGCCCCAAAGAUAACCAACCAA____CCGACCGACCCACUGAUACGUCCGGGGGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUAC__A ........((((((.((((......................(((..........))).(((((..((....))..))))).........))))))))))..(((((......)))))... (-21.12 = -21.76 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:48 2006