Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 536,621 – 536,770 |
Length | 149 |
Max. P | 0.719136 |
Location | 536,621 – 536,733 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -30.96 |
Consensus MFE | -21.18 |
Energy contribution | -20.90 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.28 |
Structure conservation index | 0.68 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.719136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 536621 112 + 22224390 GCCUCCGGCAGCUGCAAGUGUAUUUAAAUUUCAACAAAUUAGCUUAGU--------AAGUUGGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCGAAGGAAAU .(((.((((........((((..................(((((....--------.....))))).........(((((..........)))))))))(((...))))))).))).... ( -27.60) >DroSec_CAF1 24775 112 + 1 GCCUCCGGCAGCUGCAAGUGUAUUUAAAUUUCAACAAAUUAGCUUACU--------AAGUUGUCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCGGAGGCAAU (((((((((........((((................((.(((..((.--------.....))..))).))....(((((..........)))))))))(((...))))))))))))... ( -38.30) >DroSim_CAF1 24962 112 + 1 GCCUCCGGCAGCUGCAAGUGUAUUUAAAUUUCAACAAAUUAGCUUACU--------AAGUUGGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCGGAGGCAAU ((((((((((((.((((((........))))...(((.((((....))--------)).))))).)))......((((((..........))))))...(((...))))))))))))... ( -38.70) >DroEre_CAF1 28323 100 + 1 GCCUCCGGCAGCUGCAAGUGUAUUUAAAUUUCAACAAAUUAGCUUAGA--------GAGUUAGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUC------------ ..(((.(((((((((....))).................((((((...--------))))))))))))......((((((..........))))))...)))......------------ ( -22.80) >DroYak_CAF1 22610 110 + 1 GCCUCCGGCAGCUGCAAGUGUAUUUAAGUUUCAACAAAUUAGCUUAGUGAGUCAGUGAGUUAGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCU-----G----- (((...))).......((.(((((((((((..........))))))(((((.((((......)))))))))...((((((..........)))))).....))))).))-----.----- ( -27.40) >consensus GCCUCCGGCAGCUGCAAGUGUAUUUAAAUUUCAACAAAUUAGCUUAGU________AAGUUGGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCG_AGG_AAU ..(((.(((((((((....))).................((((((...........))))))))))))......((((((..........))))))...))).................. (-21.18 = -20.90 + -0.28)
Location | 536,661 – 536,770 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.14 |
Mean single sequence MFE | -31.48 |
Consensus MFE | -24.19 |
Energy contribution | -24.96 |
Covariance contribution | 0.77 |
Combinations/Pair | 1.07 |
Mean z-score | -1.52 |
Structure conservation index | 0.77 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 536661 109 + 22224390 AGCUUAGU--------AAGUUGGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCGAAGGAAAUUCCGGGGGGUUCCGGAAUGAAAAUGGAGAGACAGUUG--- ((((....--------.))))((((((((.....((((((..........))))))..((((...))))(((......((((((((....)))))))).....))).))).))))).--- ( -31.30) >DroSec_CAF1 24815 109 + 1 AGCUUACU--------AAGUUGUCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCGGAGGCAAUUCCGGGGGGUUCCGGAAUGAAAAUGGAGAGACAGUUG--- ........--------...((((((.(((.....((((((..........))))))..((.((.((((.((((((....)))))).))))))))...........)))))))))...--- ( -36.50) >DroSim_CAF1 25002 109 + 1 AGCUUACU--------AAGUUGGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCGGAGGCAAUUCCGGGGGGUUCCGGAAUGAAAAUGGAGAGACAGUUG--- ((((....--------.))))((((((((.....((((((..........))))))..((.((.((((.((((((....)))))).)))))))).............))).))))).--- ( -35.70) >DroEre_CAF1 28363 97 + 1 AGCUUAGA--------GAGUUAGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUC---------------GGGGGGUUCCGGAAUGAAAAUGGAGAGACAGUUGGGA ........--------...((((((((((.....((((((..........))))))..((((...)))---------------)......((((.........))))))).))))))).. ( -24.00) >DroYak_CAF1 22650 107 + 1 AGCUUAGUGAGUCAGUGAGUUAGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCU-----G-----GCUGGGGGGUUCCGGAAUGAAAGUGGAGAGACAGUUG--- ((((((.((...)).))))))((((((((.....((((((..........))))))((((((...))).-----.-----.(((((....))))).......)))..))).))))).--- ( -29.90) >consensus AGCUUAGU________AAGUUGGCUGCUCAUAAAUCCGUGGCCAUAAAAACACGGACACGAGAUACUCGCCG_AGG_AAUUCCGGGGGGUUCCGGAAUGAAAAUGGAGAGACAGUUG___ (((((...........)))))((((((((.....((((((..........))))))..((.((.((((.(((..........))).)))))))).............))).))))).... (-24.19 = -24.96 + 0.77)
Location | 536,661 – 536,770 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.14 |
Mean single sequence MFE | -27.06 |
Consensus MFE | -21.08 |
Energy contribution | -22.48 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.78 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 536661 109 - 22224390 ---CAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUUCCUUCGGCGAGUAUCUCGUGUCCGUGUUUUUAUGGCCACGGAUUUAUGAGCAGCCAACUU--------ACUAAGCU ---...(((((((.((......(((((((......))))))).......)).))).(((.((((.(((((....))))).)))))))......)))).......--------........ ( -28.62) >DroSec_CAF1 24815 109 - 1 ---CAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUGCCUCCGGCGAGUAUCUCGUGUCCGUGUUUUUAUGGCCACGGAUUUAUGAGCAGACAACUU--------AGUAAGCU ---....((((((((....((((((((((......))))))).(((...)))))).(((.((((.(((((....))))).)))))))....))).)))))....--------........ ( -33.00) >DroSim_CAF1 25002 109 - 1 ---CAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUGCCUCCGGCGAGUAUCUCGUGUCCGUGUUUUUAUGGCCACGGAUUUAUGAGCAGCCAACUU--------AGUAAGCU ---...(((.(((......((((((((((......))))))).(((...)))))).(((.((((.(((((....))))).)))))))....)))))).......--------........ ( -30.30) >DroEre_CAF1 28363 97 - 1 UCCCAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCC---------------GAGUAUCUCGUGUCCGUGUUUUUAUGGCCACGGAUUUAUGAGCAGCUAACUC--------UCUAAGCU ......(((.(((.........((((.((.....)).---------------))))(((.((((.(((((....))))).)))))))....)))))).......--------........ ( -21.20) >DroYak_CAF1 22650 107 - 1 ---CAACUGUCUCUCCACUUUCAUUCCGGAACCCCCCAGC-----C-----AGAGUAUCUCGUGUCCGUGUUUUUAUGGCCACGGAUUUAUGAGCAGCUAACUCACUGACUCACUAAGCU ---........................((......))(((-----.-----..((((((.((((.(((((....))))).)))))))....((((((........))).))))))..))) ( -22.20) >consensus ___CAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUU_CCU_CGGCGAGUAUCUCGUGUCCGUGUUUUUAUGGCCACGGAUUUAUGAGCAGCCAACUU________ACUAAGCU ......(((.(((..........((((((......))))))...............(((.((((.(((((....))))).)))))))....))))))....................... (-21.08 = -22.48 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:17 2006