Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,430,386 – 4,430,503 |
Length | 117 |
Max. P | 0.704151 |
Location | 4,430,386 – 4,430,503 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -28.32 |
Consensus MFE | -25.62 |
Energy contribution | -25.74 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.26 |
Structure conservation index | 0.90 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4430386 117 - 22224390 UGCAAAUGCUUU-UUUCAUAUUCCUGUAUUUUUUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGU--UUGCCAGGCCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUCU .((....))...-..((((((((((((((((.......(((((((((..((((...))))((((((.((......))--))).))))))))))))...))))))).)))))).))).... ( -28.90) >DroSec_CAF1 32731 116 - 1 UGCAAAUGCUUU-UUUCAUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAGCACUCCUCUGU--UUGCCAGAACAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU .((....))...-..((((((((((((((((-....(((.(((..(((.....)))..))).)))....((((((((--((....))))))).)))..))))))).)))))).))).... ( -28.90) >DroSim_CAF1 34058 116 - 1 UGCAAAUGCUUU-UUUCAUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAGCACUCCUCUGU--UUGCCAGACCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU .((....))...-..((((((((((((((((-(((((.(.(((((((((((((...))))..((((.......))))--))))))))).).)))))..))))))).)))))).))).... ( -29.20) >DroEre_CAF1 33839 117 - 1 UGCAAAUGCUUUUUUUCAUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGU--UUGCAAGACCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU .((....))......((((((((((((((((-......(((((((((..((((...)))).(((((.((......))--)))))..)))))))))...))))))).)))))).))).... ( -29.50) >DroYak_CAF1 33090 118 - 1 UGCAAAUGCUUU-UUUCUUAUUCCUGUAUUU-UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGUUUUUGCAAGAUCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU .((....))...-.........((...((.(-((((((.((((((((......(((((((((((((.((......))..)))).)).))))))).))))))))))))))).)).)).... ( -25.10) >consensus UGCAAAUGCUUU_UUUCAUAUUCCUGUAUUU_UUUAUGUCGUCUGGUAAUCGAUAUUUGACUGCAACACUCCUCUGU__UUGCCAGACCAGAUGGAUCGGAUGCAUGGGAUGUUGGUUUU .((....))........((((((((((((((.......(((((((((..((((...))))(((((..((......))...))).)))))))))))...))))))).)))))))....... (-25.62 = -25.74 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:37 2006