Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,429,462 – 4,429,566 |
Length | 104 |
Max. P | 0.948485 |
Location | 4,429,462 – 4,429,566 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -14.58 |
Energy contribution | -14.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.23 |
Structure conservation index | 0.62 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4429462 104 - 22224390 -----------AUUCAAAACAAC---UUUUAUUAAUGGUAACAUUACAU-UUUUCUCUUGGUGCAUAGCAGCAGCAACCCCUG-CAGUUGCACAAAGGUGCAUCCUUGCUUCAUCAUACC -----------............---......(((((....)))))...-........(((((...((((((((......)))-)...(((((....)))))....)))).))))).... ( -21.30) >DroSec_CAF1 31818 115 - 1 AUUAAGAACGUAUUCAAAACAUC---UUUUGCUAAUAGUAACAUUAGAU-UUUUCUUUGAGUGCCAAGCAGCAGCAACCCCUG-CAGUUGCACAAAGGUGCAUCCUUGCAUCAUCAUACC .........(((((((((..(((---(.((((.....))))....))))-.....)))))))))...(((((.(((.....))-).))))).....((((((....))))))........ ( -27.60) >DroSim_CAF1 33138 116 - 1 AUUAAGAACGUAUUCAAAACAUC---UUUUAUUAAUGGUAACAUAACCUUUUUUCUUUCGGUGCCAAGCAGCAGCAACCCCUG-CAGUUGCACAAAGGUGCAUCCUUGCAUCAUCAUACC ...(((((.((.......))...---..........(((......)))....)))))..((((....(((((.(((.....))-).))))).....((((((....))))))....)))) ( -22.50) >DroEre_CAF1 32833 112 - 1 AUUUAGAACAUAUUCAUAAUUUUAUUUUCC----AAGGCACCAUUACAU-UUUUAUUUUGCUGCCAAGCAGCAGCAACCCCUUUGAGUUGCACAAAGGUGCAUCCUUGCAUCA---UCCU .............................(----((((((((.......-........((((((...))))))(((((........))))).....)))))...)))).....---.... ( -24.70) >DroYak_CAF1 32188 115 - 1 AUUUAGAACGUAUUCAGAACAUUAUUUUUUAUUAAAGAAAACUUUACAU-UUUUCUUUUGGUGCCAAGCAGCAGCAACCCCUG-CAGUUGCACAUAGGUGCAUCCUUGCAUCA---UUCC .................................((((((((........-))))))))..((((..(((.((((......)))-).)))))))...((((((....)))))).---.... ( -22.30) >consensus AUUAAGAACGUAUUCAAAACAUC___UUUUAUUAAUGGUAACAUUACAU_UUUUCUUUUGGUGCCAAGCAGCAGCAACCCCUG_CAGUUGCACAAAGGUGCAUCCUUGCAUCAUCAUACC .............................................................(((......)))(((((........))))).....((((((....))))))........ (-14.58 = -14.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:33 2006