Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,429,264 – 4,429,382 |
Length | 118 |
Max. P | 0.985585 |
Location | 4,429,264 – 4,429,382 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -44.88 |
Consensus MFE | -38.76 |
Energy contribution | -40.00 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.95 |
Structure conservation index | 0.86 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4429264 118 - 22224390 CGCUCUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGCACCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUAGCUA .(((((((((((((.(((.....)))..((((((.(((((.........))))))))))))))))..((((.......))))..........))))))(((....)))......)).. ( -44.00) >DroSec_CAF1 31623 118 - 1 CGCUCUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGGCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUGGCUA .((....))....(((((((((((((((((((((.((((((.......))))))))))))..((...((((((...))))))..))....)))))...(((....))))))))))))) ( -51.20) >DroSim_CAF1 32943 118 - 1 CGCUAUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUGGCUA .((....))....(((((((((((((((((((((.(((((.........)))))))))))..((...((((((...))))))..))....)))))...(((....))))))))))))) ( -50.30) >DroEre_CAF1 32638 118 - 1 CGCUCUGGCAGCCUGGCCAAAAAGGAGAGAUCCCGAGUCGCCGGAUCAUUGACUGGUAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAUAGUCUUCGUUGCUA .((((((((..(((........)))...((((((((...(((((........))))).)))))....((((((...)))))).......)))))))))(((((......))))))).. ( -39.40) >DroYak_CAF1 31993 118 - 1 CGCUCUGGCAGCCUGGCUAAAAAGGACAGAUCCCGAGCCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUUUUUGCUA .(((((((((((((((((.....(((....)))..)))).((((........))))....)))))..((((((...))))))..........))))))(((....)))......)).. ( -39.50) >consensus CGCUCUGGCAGCCUGGCCAAGAAGGCGAGAUCCCGAGUCGCCGGAUCAUUGACUGGGAUCGGGUUACGCUGUGCCACACAGUUCACAGAAUCGCCAGAGACGAAAGUCUUCUUGGCUA .(((((((((((((.(((.....)))..((((((.(((((.........))))))))))))))))..((((((...))))))..........))))))(((....)))......)).. (-38.76 = -40.00 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:32 2006