Locus 1496

Sequence ID X_DroMel_CAF1
Location 4,424,517 – 4,424,637
Length 120
Max. P 0.612893
window2406

overview

Window 6

Location 4,424,517 – 4,424,637
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -33.20
Consensus MFE -29.22
Energy contribution -29.46
Covariance contribution 0.24
Combinations/Pair 1.02
Mean z-score -1.35
Structure conservation index 0.88
SVM decision value 0.16
SVM RNA-class probability 0.612893
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4424517 120 - 22224390
CCAUUUCCCACGAUGUGCAGCUGGUCCUCCGUCUCCUCGCAAUUGGCACACAGAUUAUUAAGUUAAUUAAAUGCUAAAUAGCUGGAAACCCGAUUCGAGGGAGUUCAUUAGGUGGAAAUG
.((((((((..((((.((....((....)).((.(((((.((((((....(((.(((((.(((.........))).)))))))).....))))))))))))))).))))..).))))))) ( -35.10)
>DroSec_CAF1 26905 120 - 1
UCAUUUCCCACGAUGUGCAGCUGGUCCUCCGUCUCCUCGCAAUUGGCACACAGAUUAUUAAGUUAAUUAAAUGCUAAAUAGCUGGAAACCCGAUUCGAGGGAGUUCAUUAGGUGGAAAUG
.((((((((..((((.((....((....)).((.(((((.((((((....(((.(((((.(((.........))).)))))))).....))))))))))))))).))))..).))))))) ( -34.90)
>DroSim_CAF1 28243 120 - 1
CCAUUUCCCACGAUGUGCAGCUGGUCCUCCGUCUCCUCGCAAUUGGCACAAAGAUUAUUAAGUUAAUUAAAUGCUAAAUAGCUGGAAACCCGAUUCGAGGGACUUCAUUAGGUGGAAAUG
.((((((((..((((.......((....))(((.(((((.((((((.....((.(((((.(((.........))).)))))))......))))))))))))))..))))..).))))))) ( -32.70)
>DroEre_CAF1 27906 120 - 1
CCAUUUCCCACGAUGUGCAGCUGGUCCUCCGUCUCCUCGCAAUUGGCACAGAGAUUAUUAAGUUAAUUAAAUGCUAAAUAGCUGGAAACCCGACUCGAGGGAGUUCAUUAGGUGGAAAUG
.(((((((.((...(((.((((..(((((.((((((..((..((((((....(((((......)))))...))))))...)).))).....)))..))))))))))))...))))))))) ( -30.60)
>DroYak_CAF1 27494 120 - 1
CCAUUUCCCACGAUGUGCAGCUGGUACUCCGUCUUCUCGCAAUUGGCACAGAGAUUAUUAAGUUAAUUAAAUGCUAAAUAGCUGGAAACCCGAUUCGAGGGAGUUCAUUAGCUGGAAAUG
.((((((((((...))).((((((((((((.((...((((..((((((....(((((......)))))...))))))...)).((....))))...)).)))))..)))))))))))))) ( -32.70)
>consensus
CCAUUUCCCACGAUGUGCAGCUGGUCCUCCGUCUCCUCGCAAUUGGCACACAGAUUAUUAAGUUAAUUAAAUGCUAAAUAGCUGGAAACCCGAUUCGAGGGAGUUCAUUAGGUGGAAAUG
.(((((((..(...(((.((((((....))...((((((.((((((.....((.(((((.(((.........))).)))))))(....))))))))))))))))))))..)..))))))) (-29.22 = -29.46 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:06 2006