Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,421,082 – 4,421,192 |
Length | 110 |
Max. P | 0.645223 |
Location | 4,421,082 – 4,421,192 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 93.29 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -25.16 |
Energy contribution | -24.83 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.08 |
Mean z-score | -1.67 |
Structure conservation index | 0.93 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4421082 110 - 22224390 AUAUACAUAGGUAUAUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUUGACUACUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGGCGCUUUAGCAAU (((((.(((((....))))).))))).....((((((......(((((((((.((.......)).)))))))))(((((.((..((....))..)))))))))))))... ( -27.20) >DroEre_CAF1 24537 104 - 1 A------UAGGUAUUUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUCGACCGCUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGGCGCUUUAGCAAU (------((((....)))))...........((((((......(((((((((((....)).....)))))))))(((((.((..((....))..)))))))))))))... ( -27.30) >DroYak_CAF1 24141 108 - 1 A--UACAUAGGUAUAUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUCGACUACUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGACGCUUUAGCAAU .--....(((((.(((((((((((.(((....))).)))))))))))..((((.((((((.....)))))))))).))))).((((..((((....))))..)))).... ( -26.70) >consensus A__UACAUAGGUAUAUCUAUAUAUAUGGUUAGCUGGAUAUGUAGAUACUCGACUACUUGGAUUACUCGGGUGUCGCGCUUAAUUGAUUUGUCUUUUGGCGCUUUAGCAAU .......(((((.(((((((((((.(((....))).)))))))))))..((((.((((((.....)))))))))).))))).((((..((((....))))..)))).... (-25.16 = -24.83 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:45 2006