Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,419,896 – 4,420,011 |
Length | 115 |
Max. P | 0.740984 |
Location | 4,419,896 – 4,420,011 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.81 |
Mean single sequence MFE | -35.55 |
Consensus MFE | -28.00 |
Energy contribution | -27.56 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4419896 115 - 22224390 -----GAAUCUGAAACCGAAUCCCGAUCCCGAUUCUGGGCCGCGGGCUUCGGAUAGUGGGUGCUCGAUAAGCAGGGUAAAUAUUGAAUCAACUGAACCGCAAUAAACCCAAACAAACCCG -----..........(((((.((((..((((....))))...)))).))))).....(((((((.....))).((((...(((((..((....))....))))).))))......)))). ( -36.40) >DroSec_CAF1 22442 120 - 1 GCCGUGAAUCUGGAACCGAAUCCCGAUCCCGAUUCUGGGCCGCGGGCUUCGGAUAGUGGGUGCUCGAUAAGCUGGGUAAAUAUUGAAUCAACUGAACCGCAAUAAACCCAAACAAACCCG .(((......)))..(((((.((((..((((....))))...)))).))))).....(((((((.....)))(((((...(((((..((....))....))))).))))).....)))). ( -37.40) >DroSim_CAF1 23757 111 - 1 ---------CUGGAACCGAAUCCCGAUCCCGAUUCUGGGCCGCGGGCUUCGGAUAGUGGGUGCUCGAUAAGCUGGGUAAAUAUUGAAUCAACUGAACCGCAAUAAACCCAAACAAACCCG ---------......(((((.((((..((((....))))...)))).))))).....(((((((.....)))(((((...(((((..((....))....))))).))))).....)))). ( -36.50) >DroEre_CAF1 23423 114 - 1 GCCGUGAAUCUGGAACCGAAUCC------CGAUUCUGGGCCGCGGGUUUUGGAUAGUGGGUGCUCGAUAAGCAGGGUAAAUAUUGAAUCAACUGAACCGCAAUAAGCCCAAACAAACCCG (((..(((((.(((......)))------.)))))..)))..(((((((.(.....(((((((((........))))...(((((..((....))....))))).)))))..)))))))) ( -34.80) >DroYak_CAF1 23081 108 - 1 ------AAUCUGGAACUGAAUCC------CGAUUCUGGGCCGCGGGUUCCGGAUAGUGGGUGCUCGAUAAGCAGGGUAAAUAUUGAACCAACUGAACCGCAAUAAACCCAAACAAACCCG ------.(((((((((((...((------((....))))...).))))))))))...(((((((.....))).((((...(((((..............))))).))))......)))). ( -32.64) >consensus _____GAAUCUGGAACCGAAUCCCGAUCCCGAUUCUGGGCCGCGGGCUUCGGAUAGUGGGUGCUCGAUAAGCAGGGUAAAUAUUGAAUCAACUGAACCGCAAUAAACCCAAACAAACCCG .......(((((((.(((((((........))))).))(((...))))))))))...(((((((.....))).((((...(((((..((....))....))))).))))......)))). (-28.00 = -27.56 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:44 2006