Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,419,551 – 4,419,671 |
Length | 120 |
Max. P | 0.998088 |
Location | 4,419,551 – 4,419,671 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.74 |
Mean single sequence MFE | -18.24 |
Consensus MFE | -17.72 |
Energy contribution | -17.72 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.97 |
SVM decision value | 3.00 |
SVM RNA-class probability | 0.998088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4419551 120 + 22224390 AAGCCUUCAAGCCAGCUCUAUCGUAAAUCAUAAGCGAUAAGAUAACACUCAUAAAAAUAAGUCAAAACCUUCACACGAUCAGAGCGAAAUCAAACAAAGAUAUAGACACAGACACUGGCA ..........((((((((((((((..(((......)))..((......))........................))))).)))))...(((.......)))..............)))). ( -18.80) >DroSec_CAF1 22106 114 + 1 AAGCCUUCAAGCCAGCUCUAUCGUAAAUCAUAAGCGAUAAGAUAACUCUCAUAAAAAUAAGUCAAAACCUUCACACGAUCAGAGCGAAAUCAAACAAAGAUAUAGA------CACUGGCA ..........((((((((((((((..(((......)))..((......))........................))))).)))))...(((.......))).....------...)))). ( -18.80) >DroSim_CAF1 23419 114 + 1 AAGCCUUCAAGCCAGCUCUAUCGUAAAUCAUAAGCGAUAAGAUAACACUCAUAAAAAUAAGUCAAAACCUUCACACGAUCAGAGCGAAAUCAAACAAAGAUAUAGA------CACUGGCA ..........((((((((((((((..(((......)))..((......))........................))))).)))))...(((.......))).....------...)))). ( -18.80) >DroEre_CAF1 23069 114 + 1 AAGCCUUCAAGCCUGCUCUAUCGUAAAUCAUAAGCGAUAAGAUAACACUCAUAAAAAUAAGUCAAAACCGUCACACGAUCAGAGCGAAAUCAAACAAAGAUAUAGA------CACUGGCA ..........((((((((((((((..(((......)))..((......))........................))))).))))))..(((.......))).....------....))). ( -17.40) >DroYak_CAF1 22753 114 + 1 AAGCCUUCAAGCCUGCUCUAUCGUAAAUCAUAAGCGAUAAGAUAACACUCAUAAAAAUAAGUCAAAACCUUCACACGAUCAGAGCGAAAUCAAACAAAGAUAUAGA------CACUGGCA ..........((((((((((((((..(((......)))..((......))........................))))).))))))..(((.......))).....------....))). ( -17.40) >consensus AAGCCUUCAAGCCAGCUCUAUCGUAAAUCAUAAGCGAUAAGAUAACACUCAUAAAAAUAAGUCAAAACCUUCACACGAUCAGAGCGAAAUCAAACAAAGAUAUAGA______CACUGGCA ..........(((.((((((((((..(((......)))..((......))........................))))).)))))...(((.......)))...............))). (-17.72 = -17.72 + 0.00)
Location | 4,419,551 – 4,419,671 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.74 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -24.50 |
Energy contribution | -24.90 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.84 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4419551 120 - 22224390 UGCCAGUGUCUGUGUCUAUAUCUUUGUUUGAUUUCGCUCUGAUCGUGUGAAGGUUUUGACUUAUUUUUAUGAGUGUUAUCUUAUCGCUUAUGAUUUACGAUAGAGCUGGCUUGAAGGCUU .((((((.((((((((...(((((..(.(((((.......))))).)..)))))...)))......(((((((((.........)))))))))......))))))))))).......... ( -33.70) >DroSec_CAF1 22106 114 - 1 UGCCAGUG------UCUAUAUCUUUGUUUGAUUUCGCUCUGAUCGUGUGAAGGUUUUGACUUAUUUUUAUGAGAGUUAUCUUAUCGCUUAUGAUUUACGAUAGAGCUGGCUUGAAGGCUU .(((((((------((...(((((..(.(((((.......))))).)..)))))...)))((((....((((((....)))))).....))))...........)))))).......... ( -26.20) >DroSim_CAF1 23419 114 - 1 UGCCAGUG------UCUAUAUCUUUGUUUGAUUUCGCUCUGAUCGUGUGAAGGUUUUGACUUAUUUUUAUGAGUGUUAUCUUAUCGCUUAUGAUUUACGAUAGAGCUGGCUUGAAGGCUU .(((((((------((...(((((..(.(((((.......))))).)..)))))...)))......(((((((((.........)))))))))...........)))))).......... ( -29.90) >DroEre_CAF1 23069 114 - 1 UGCCAGUG------UCUAUAUCUUUGUUUGAUUUCGCUCUGAUCGUGUGACGGUUUUGACUUAUUUUUAUGAGUGUUAUCUUAUCGCUUAUGAUUUACGAUAGAGCAGGCUUGAAGGCUU .(((...(------(((..(((.......)))...((((((.(((((....(((....))).....(((((((((.........)))))))))..))))))))))))))).....))).. ( -27.20) >DroYak_CAF1 22753 114 - 1 UGCCAGUG------UCUAUAUCUUUGUUUGAUUUCGCUCUGAUCGUGUGAAGGUUUUGACUUAUUUUUAUGAGUGUUAUCUUAUCGCUUAUGAUUUACGAUAGAGCAGGCUUGAAGGCUU .(((...(------(((..(((.......)))...((((((.(((((...((((....))))....(((((((((.........)))))))))..))))))))))))))).....))).. ( -28.40) >consensus UGCCAGUG______UCUAUAUCUUUGUUUGAUUUCGCUCUGAUCGUGUGAAGGUUUUGACUUAUUUUUAUGAGUGUUAUCUUAUCGCUUAUGAUUUACGAUAGAGCUGGCUUGAAGGCUU .(((...............(((.......)))...((((((.(((((...((((....))))....(((((((((.........)))))))))..))))))))))).........))).. (-24.50 = -24.90 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:42 2006