Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,419,234 – 4,419,354 |
Length | 120 |
Max. P | 0.510825 |
Location | 4,419,234 – 4,419,354 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.49 |
Mean single sequence MFE | -24.88 |
Consensus MFE | -22.76 |
Energy contribution | -23.56 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.91 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4419234 120 + 22224390 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAAAAAAUAUAAACA .....((((....)))).((((..................(.(((((...(((((....)))))....))))))(((((...(....)...)))))......)))).............. ( -24.80) >DroSec_CAF1 21796 118 + 1 UUUUCGACGGUCACGUCCCC-ACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAA-AAUUAUAAACA .....((((....))))...-.........(((.......(.(((((...(((((....)))))....))))))(((((...(....)...)))))........))).-........... ( -24.60) >DroSim_CAF1 23109 119 + 1 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGUGAGAUUAAUACUACACAUAGGAA-AAUUAUAAACA .....((((....)))).((((..................(.(((((...(((((....)))))....))))))(((((...(....)...)))))......))))..-........... ( -25.30) >DroEre_CAF1 22759 119 + 1 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAA-AAAUAUAAACA .....((((....)))).((((..................(.(((((...(((((....)))))....))))))(((((...(....)...)))))......))))..-........... ( -24.80) >DroYak_CAF1 22443 119 + 1 UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAAGAA-AAAUAUAAUCC (((((((((....))))......................((((((((...(((((....)))))....))))(((((.....)))))......))))........)))-))......... ( -24.90) >consensus UUUUCGACGGUCACGUCCCCUACAUAAAUAUCCAUAAAAAGUAAUGCUCACAUCCGUCCGGAUGAAAUGCGUUCGUGUUUGGCGCGAGAUUAAUACUACACAUAGGAA_AAAUAUAAACA .....((((....)))).............(((.......(.(((((...(((((....)))))....))))))(((((...(....)...)))))........)))............. (-22.76 = -23.56 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:40 2006