Locus 1481

Sequence ID X_DroMel_CAF1
Location 4,416,083 – 4,416,185
Length 102
Max. P 0.924663
window2371

overview

Window 1

Location 4,416,083 – 4,416,185
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 62.16
Mean single sequence MFE -21.38
Consensus MFE -9.94
Energy contribution -11.46
Covariance contribution 1.52
Combinations/Pair 1.33
Mean z-score -1.95
Structure conservation index 0.46
SVM decision value 1.16
SVM RNA-class probability 0.924663
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4416083 102 + 22224390
ACAAGAGUCUUUGGGGAUUCUUCGGUAGGGUCUUCCAGCAAAAGAAGAAUUGUACAAUAUACAAAUAGUCAA--------CAAGUUUA----CAAUAUAC------AAGACUCAAGCUAA
....(((((((((((((((((.....)))))).))))......((..(.(((((.....))))).)..))..--------........----........------)))))))....... ( -21.20)
>DroSec_CAF1 18480 88 + 1
ACAAGAGUCUUUGGGGAUUCCUCAGUGGAGUUUUCCAGCUAAAGAAGAAUCGUACAAUAUACAA-------------------GACUA----CA---AAC------AAGACUCAAGCUAA
....(((((((.(..((((((.....))))))..)................(((.....)))..-------------------.....----..---...------)))))))....... ( -19.00)
>DroSim_CAF1 19923 88 + 1
ACAAGAGUCUGAGGGGAUUCCUCAGUGGAGUCUUCCAGCUAAAAAAGAAUUGUACAAUAUACAA-------------------GACUA----CA---AAC------AAGACUCAAGCUAA
....(((((((.(((((((((.....)))))))))).........((..(((((.....)))))-------------------..)).----..---...------.))))))....... ( -23.50)
>DroEre_CAF1 19498 109 + 1
ACAAGAGUC--------UACUUCACUGGAAUCUUCCAGA---AAAAGAAUGGUACAAUACACAAAUAGUCAGCAUAUUAGCCAAUUUAGCCCUAGUUUAUUGGCUUUAUAUUCGAGCUAA
......(((--------(((((..(((((....))))).---..)))..))).))..........((((..(.((((.(((((((..(((....))).)))))))..)))).)..)))). ( -21.40)
>DroYak_CAF1 19168 104 + 1
ACA-GAGUUUUUGGGGAUUCCUUAGUGGGGUCUUCCAGG---AAAAUAGUUGUACAAUGCCCACAAACCGUGCAUAUUAGCAAAUUUG----UAAUAUACU-------UAUUCAA-AUAA
(((-(..((((((((((((((.....)))))).))))))---)).....)))).........(((((...(((......)))..))))----)........-------.......-.... ( -21.80)
>consensus
ACAAGAGUCUUUGGGGAUUCCUCAGUGGAGUCUUCCAGC_AAAAAAGAAUUGUACAAUAUACAAA_A_____________C_AGUUUA____CA_U_UAC______AAGACUCAAGCUAA
....((((((..(((((((((.....)))))))))................(((.....))).............................................))))))....... ( -9.94 = -11.46 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:34 2006