Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,407,979 – 4,408,113 |
Length | 134 |
Max. P | 0.999734 |
Location | 4,407,979 – 4,408,074 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -21.46 |
Energy contribution | -22.02 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.05 |
Structure conservation index | 0.75 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4407979 95 + 22224390 -----------------UAAAGUUUAA--CUGCAUA-ACAAUUGUAUGUGUUGUUUUUUUUGCAGUGUUGGCCCAAAUUGGAGCCAAAGUUGGACGGUUUUUGGGCCAGGCACGA -----------------.........(--(((((.(-(((((.......)))))).....)))))).((((((((((......(((....)))......))))))))))...... ( -29.70) >DroSec_CAF1 10485 94 + 1 -----------------UAAUGUUUUAUCCUUGAUA-AGAAUUGUAUGUAUU---UUUUUGGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGUCUGUUUUUGGGACAGGCACGA -----------------.....(((((((...))))-)))............---.........(((((..((((((.((((.(((....)))))))..))))))...))))).. ( -23.80) >DroSim_CAF1 10578 96 + 1 -----------------UAAUGUUUAAUCCUUGAUA-AGAAUUGUAUGUGUU-UUUUUUUGGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGUCUGUUUUUGGGCCAGGCACGA -----------------...........((..((.(-(((((.......)))-)))))..))..(((((((((((((.((((.(((....)))))))..))))))))).)))).. ( -29.10) >DroEre_CAF1 11303 109 + 1 GAAGGCAUUUAAUACGGCUAUGUGUUA---UUGAUAAACAAUUGUGUGUGCU---UUUUCCGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGACUGUUUUUGGGCAAGGCACGA ((((((((.(((((((....)))))))---.......(((....))))))))---)))......(((((.(((((((..(.(((((....))).)).).)))))))..))))).. ( -32.50) >consensus _________________UAAUGUUUAA__CUUGAUA_ACAAUUGUAUGUGUU___UUUUUGGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGACUGUUUUUGGGCCAGGCACGA ................................................................(((((((((((((..(.(((((....))).)).).))))))))).)))).. (-21.46 = -22.02 + 0.56)
Location | 4,407,979 – 4,408,074 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -18.52 |
Energy contribution | -19.52 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.24 |
Structure conservation index | 0.82 |
SVM decision value | 3.97 |
SVM RNA-class probability | 0.999734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4407979 95 - 22224390 UCGUGCCUGGCCCAAAAACCGUCCAACUUUGGCUCCAAUUUGGGCCAACACUGCAAAAAAAACAACACAUACAAUUGU-UAUGCAG--UUAAACUUUA----------------- .......(((((((((......(((....)))......)))))))))..((((((.....(((((.........))))-).)))))--).........----------------- ( -22.60) >DroSec_CAF1 10485 94 - 1 UCGUGCCUGUCCCAAAAACAGACCAACUUUGGCUCCAAUUUGGGCCAGCACUGCCAAAAA---AAUACAUACAAUUCU-UAUCAAGGAUAAAACAUUA----------------- ..((((.((.((((((...((.(((....)))))....)))))).)))))).........---..........(((((-.....))))).........----------------- ( -18.60) >DroSim_CAF1 10578 96 - 1 UCGUGCCUGGCCCAAAAACAGACCAACUUUGGCUCCAAUUUGGGCCAGCACUGCCAAAAAAA-AACACAUACAAUUCU-UAUCAAGGAUUAAACAUUA----------------- ..((((.(((((((((...((.(((....)))))....)))))))))))))...........-.........((((((-.....))))))........----------------- ( -26.60) >DroEre_CAF1 11303 109 - 1 UCGUGCCUUGCCCAAAAACAGUCCAACUUUGGCUCCAAUUUGGGCCAGCACUGCGGAAAA---AGCACACACAAUUGUUUAUCAA---UAACACAUAGCCGUAUUAAAUGCCUUC ..((((...(((((((...((.(((....)))))....)))))))..))))(((((...(---((((........))))).....---..........)))))............ ( -22.87) >consensus UCGUGCCUGGCCCAAAAACAGACCAACUUUGGCUCCAAUUUGGGCCAGCACUGCCAAAAA___AACACAUACAAUUCU_UAUCAAG__UAAAACAUUA_________________ ..((((.(((((((((...((.(((....)))))....)))))))))))))................................................................ (-18.52 = -19.52 + 1.00)
Location | 4,407,996 – 4,408,113 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.73 |
Mean single sequence MFE | -38.28 |
Consensus MFE | -26.46 |
Energy contribution | -26.54 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -3.05 |
Structure conservation index | 0.69 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4407996 117 + 22224390 -ACAAUUGUAUGUGUUGUUUUUUUUGCAGUGUUGGCCCAAAUUGGAGCCAAAGUUGGACGGUUUUUGGGCC-AGGCACGAGCCAAGAAACCGCAGAAAUGCAGCUUGCACUAAGAAA-AC -.....((((...(((((..(((((((.((..(((((((((......(((....)))......))))))))-)(((....))).....)).))))))).))))).))))........-.. ( -38.50) >DroSec_CAF1 10504 114 + 1 -AGAAUUGUAUGUAUU---UUUUUGGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGUCUGUUUUUGGGAC-AGGCACGAGCCAAGAAACCGCAGAAAUGCAGCUUGCACUAAGAAA-AC -.....((((.((..(---((((((((.(((((..((((((.((((.(((....)))))))..))))))..-.)))))..)))))))))..(((....))).)).))))........-.. ( -40.20) >DroSim_CAF1 10597 116 + 1 -AGAAUUGUAUGUGUU-UUUUUUUGGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGUCUGUUUUUGGGCC-AGGCACGAGCCAAGAAACCGCAGAAAUGCAGCUUGCACUAAGAAA-AC -..........((((.-.(((((((((.(((((((((((((.((((.(((....)))))))..))))))))-).))))..)))))))))..(((....))).....)))).......-.. ( -46.10) >DroEre_CAF1 11336 115 + 1 AACAAUUGUGUGUGCU---UUUUCCGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGACUGUUUUUGGGCA-AGGCACGAGCCAAGAAACCGCAGAAAUGCAGCUUGCACUAAGAAA-AA .......(((((.(((---.((((.((.(((((.(((((((..(.(((((....))).)).).))))))).-.)))))..))...))))..(((....)))))).))))).......-.. ( -37.20) >DroYak_CAF1 10726 102 + 1 ---------------U---UUUCCCCCAGUGCUGGCCCAAUUUGGAGUCAAAGUAGGACGGUUUUUGGACAAAGGCACGAGCCAAGAAACCGCAGAAAUGCAGCUUGCACUAAGAAAAAA ---------------(---((((....(((((((((((.....)).))))((((.....(((((((.......(((....))).)))))))(((....))).)))))))))..))))).. ( -29.40) >consensus _ACAAUUGUAUGUGUU___UUUUUCGCAGUGCUGGCCCAAAUUGGAGCCAAAGUUGGACUGUUUUUGGGCC_AGGCACGAGCCAAGAAACCGCAGAAAUGCAGCUUGCACUAAGAAA_AC ...........................(((((((((((.....)).))))((((((....(((((((((....(((....)))......)).))))))).)))))))))))......... (-26.46 = -26.54 + 0.08)
Location | 4,407,996 – 4,408,113 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.73 |
Mean single sequence MFE | -35.93 |
Consensus MFE | -27.92 |
Energy contribution | -28.56 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -3.50 |
Structure conservation index | 0.78 |
SVM decision value | 2.99 |
SVM RNA-class probability | 0.998027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4407996 117 - 22224390 GU-UUUCUUAGUGCAAGCUGCAUUUCUGCGGUUUCUUGGCUCGUGCCU-GGCCCAAAAACCGUCCAACUUUGGCUCCAAUUUGGGCCAACACUGCAAAAAAAACAACACAUACAAUUGU- ((-(((.....(((((((((((....))))))))...(((....)))(-((((((((......(((....)))......))))))))).....)))...)))))...............- ( -33.50) >DroSec_CAF1 10504 114 - 1 GU-UUUCUUAGUGCAAGCUGCAUUUCUGCGGUUUCUUGGCUCGUGCCU-GUCCCAAAAACAGACCAACUUUGGCUCCAAUUUGGGCCAGCACUGCCAAAAA---AAUACAUACAAUUCU- ..-.......(((.((((((((....)))))))).(((((..((((.(-(.((((((...((.(((....)))))....)))))).)))))).)))))...---..)))..........- ( -32.70) >DroSim_CAF1 10597 116 - 1 GU-UUUCUUAGUGCAAGCUGCAUUUCUGCGGUUUCUUGGCUCGUGCCU-GGCCCAAAAACAGACCAACUUUGGCUCCAAUUUGGGCCAGCACUGCCAAAAAAA-AACACAUACAAUUCU- ..-.......(((.((((((((....)))))))).(((((..((((.(-((((((((...((.(((....)))))....))))))))))))).))))).....-..)))..........- ( -41.50) >DroEre_CAF1 11336 115 - 1 UU-UUUCUUAGUGCAAGCUGCAUUUCUGCGGUUUCUUGGCUCGUGCCU-UGCCCAAAAACAGUCCAACUUUGGCUCCAAUUUGGGCCAGCACUGCGGAAAA---AGCACACACAAUUGUU ((-(((((((((((((((((((....))))))))...(((....))).-.(((((((...((.(((....)))))....)))))))..)))))).))))))---)............... ( -37.10) >DroYak_CAF1 10726 102 - 1 UUUUUUCUUAGUGCAAGCUGCAUUUCUGCGGUUUCUUGGCUCGUGCCUUUGUCCAAAAACCGUCCUACUUUGACUCCAAAUUGGGCCAGCACUGGGGGAAA---A--------------- .(((..((((((((((((((((....))))))))..(((((((.......(((.(((...........)))))).......)))))))))))))))..)))---.--------------- ( -34.84) >consensus GU_UUUCUUAGUGCAAGCUGCAUUUCUGCGGUUUCUUGGCUCGUGCCU_GGCCCAAAAACAGUCCAACUUUGGCUCCAAUUUGGGCCAGCACUGCCAAAAA___AACACAUACAAUUCU_ ...(((..((((((((((((((....))))))))...(((....)))..((((((((......((......))......)))))))).))))))..)))..................... (-27.92 = -28.56 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:14 2006