Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,407,363 – 4,407,478 |
Length | 115 |
Max. P | 0.888122 |
Location | 4,407,363 – 4,407,478 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.27 |
Mean single sequence MFE | -37.46 |
Consensus MFE | -24.77 |
Energy contribution | -25.25 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -2.43 |
Structure conservation index | 0.66 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4407363 115 + 22224390 CGGAUCAACAACAGAUUGCCGGGACAGAUGUUUUGGCUGAUGAUGAUCCCUUUUUUU-UUUAACCAUGGAAUGGGCAGGG----GAAUCGGGAUCCUCGAUCCUCGAUCCUCGAGACCUA .((((((.((.((....((((((((....)))))))))).)).))))))........-.............(((((.(((----((.((((((((...))))).))))))))..).)))) ( -38.30) >DroSec_CAF1 9894 105 + 1 CGGGUCAACAACAGAUUGCCGGGACAGAUGUUUUGGCUGAUGAUGAUCCCUUUUUUU-U---ACCAUGGAAUGGGCAGGG----GAAUCGGGAUCCUCG-------AUCCUCGAGACCUA .(((((..((.((....((((((((....))))))))...)).)).((((((.....-.---.((((...))))..))))----)).((((((((...)-------)))).)))))))). ( -35.80) >DroSim_CAF1 9985 105 + 1 CGGGUCAACAACAGAUUGCCGGGACAGAUGUUUUGGCUGAUGAUGAUACCUUUUUUU-U---ACCAUGGAAUGGGCAGGG----GAAUCGGGAUCCUCG-------AUCCUCGAGACCUA .(((((..((.((....((((((((....))))))))...)).))...(((.((((.-.---.....)))).)))..(((----((.(((((...))))-------))))))..))))). ( -32.70) >DroEre_CAF1 10681 97 + 1 CGGGUCAACAACAGAUUGCCGGGACAGAUGUUUUGGCUGAUG---AUCCCUUUUUUA------CCCUGGAAUGGGCAGGACAGGGAAUCGGGAUC--------------CUCGAGACCUA .(((((...........((((((((....))))))))(((.(---(((((....((.------(((((............)))))))..))))))--------------.))).))))). ( -36.40) >DroYak_CAF1 10066 96 + 1 UGGGUCAACAACAGAUUGCCAAGACAGAUGUUUUGGCUGAUG---AUCCCUUUUUUAGU---GCCCUGGGAUGGGCAGGA----GAAUCGGGAUC--------------CUCGAGACCUA ((((((...........((((((((....))))))))(((.(---(((((..((((..(---((((......)))))..)----)))..))))))--------------.))).)))))) ( -44.10) >consensus CGGGUCAACAACAGAUUGCCGGGACAGAUGUUUUGGCUGAUGAUGAUCCCUUUUUUU_U___ACCAUGGAAUGGGCAGGG____GAAUCGGGAUCCUCG_______AUCCUCGAGACCUA .(((((.....((....((((((((....))))))))...))..((((((..(((........((........)).........)))..))))))...................))))). (-24.77 = -25.25 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:10 2006