Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,406,072 – 4,406,182 |
Length | 110 |
Max. P | 0.816222 |
Location | 4,406,072 – 4,406,182 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 93.12 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -28.20 |
Energy contribution | -28.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 1.00 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4406072 110 - 22224390 ---UAUGUAAAAGCACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUAUGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA ---............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... ( -28.20) >DroSec_CAF1 8666 110 - 1 ---UAUGUAAAAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUACGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA ---............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... ( -28.20) >DroSim_CAF1 8754 112 - 1 -UAUAUGUAAAAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUACGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA -..............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... ( -28.20) >DroYak_CAF1 8831 103 - 1 A---------AAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUAUGAGUGCUCACAUUUAGGCACUGACAAAAAA-GA .---------.....(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........-.. ( -28.20) >consensus ___UAUGUAAAAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUACGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA ...............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... (-28.20 = -28.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:08 2006