Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,402,918 – 4,403,072 |
Length | 154 |
Max. P | 0.824168 |
Location | 4,402,918 – 4,403,038 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -30.94 |
Consensus MFE | -27.40 |
Energy contribution | -27.96 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.39 |
Structure conservation index | 0.89 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4402918 120 + 22224390 ACCCACAAAUGGCCCUUUUGGCAGAAACUUUCAUCCGCAUCGAUUCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUAAUAAAACGGGUUCU ((((.......(((.....)))....(((((((((......)))(((((((((.....((((....))))...)))))))))..)))))).......................))))... ( -32.40) >DroSec_CAF1 5528 120 + 1 ACCCACAAAUGGCCCUUUUGGCAGAAACUUUCAUCCACAUCGAUGCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGCCAAAGAAGAAAUAGUAAUCAAACGGGUUCU ..........((((((((((((.........((((......))))((((((((.....((((....))))...)))))))).......)))))))........((......))))))).. ( -33.10) >DroSim_CAF1 5611 120 + 1 ACCCACAAAUGGCCCUUUUGGCAGAAACUUUCAUCCGCAUCGAUGCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGAACCCGACAGAAAGCCAAAGAAGAAAUAGUAAUCAAACGGGUUCU ..........((((((((((((.............((((....))))((((..(((((((((....))).))))))))))........)))))))........((......))))))).. ( -30.20) >DroEre_CAF1 6277 120 + 1 ACCCACAAAGGGCCCUUUUGGCAGAAACUUUCAUCCGCAUCGAUGCGGGGUUAUUAAUGAUCGGCCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUCAUAAAACGGGUUCC .........(((((((((((...((...((((.((.(((....)))(((((((.....((((....))))...)))))))(((.....)))...)).))))...)).))))).)))))). ( -33.50) >DroYak_CAF1 5749 120 + 1 ACACACAAUGGGCCCUUUUGGCAGAAACUUUCAUCCGCAUCGAUGCUUGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUAAUAAAACGGGUUCU .........(((((((((((((...((((..((((......))))...))))..........((((((....))))))..........)))))))........((......)))))))). ( -25.50) >consensus ACCCACAAAUGGCCCUUUUGGCAGAAACUUUCAUCCGCAUCGAUGCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUAAUAAAACGGGUUCU ..........((((((((((((.........((((......))))((((((((.....((((....))))...)))))))).......)))))))........((......))))))).. (-27.40 = -27.96 + 0.56)
Location | 4,402,958 – 4,403,072 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.05 |
Mean single sequence MFE | -31.56 |
Consensus MFE | -23.04 |
Energy contribution | -23.84 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.73 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4402958 114 + 22224390 CGAUUCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUAAUAAAACGGGUUCUCGGAAGAAGAAAGCCCAACGAUGCUAGCCAAGCU------ ((.((((((((((.....((((....))))...)))))))(((.....)))...)))................((((((((....).)))..))))..))..(((.....))).------ ( -31.20) >DroSec_CAF1 5568 114 + 1 CGAUGCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGCCAAAGAAGAAAUAGUAAUCAAACGGGUUCUCGGAAGAAGAAAGCCCAACGAUGCUGGCCAAGCU------ ...((((((((((.....((((....))))...)))))))).))....((((...........((......))((((((((....).)))..))))........))))......------ ( -32.90) >DroSim_CAF1 5651 114 + 1 CGAUGCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGAACCCGACAGAAAGCCAAAGAAGAAAUAGUAAUCAAACGGGUUCUCGGAAGAAGAAAGCCCAACGAUGCUGGCCAAGCU------ ....((.((((..(((((((((....))).))))))))))........((((...........((......))((((((((....).)))..))))........))))...)).------ ( -28.30) >DroEre_CAF1 6317 116 + 1 CGAUGCGGGGUUAUUAAUGAUCGGCCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUCAUAAAACGGGUUCCCGGAA---GAAAGCCCAAAGAUGCUAGCCAAGCUGG-GAU .(((..(((((((.....((((....))))...)))))))(((.....)))............))).......(((((..(....---)..)))))....((.(((((...)))))-.)) ( -34.40) >DroYak_CAF1 5789 117 + 1 CGAUGCUUGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUAAUAAAACGGGUUCUCCAAA---GAAAGCCCAAUGGUGCUAGCCAAGCUGGAGAU ....(((((((((.........((((((....))))))(((((.....)))......................(((((.((....---)).)))))...))...)))))))))....... ( -31.00) >consensus CGAUGCGGGGUUAUUAAUGAUCGGUCGAUCCAUUGACCCCGACAGAAAGUCAAAGAAGAAAUAGUAAUAAAACGGGUUCUCGGAAGAAGAAAGCCCAACGAUGCUAGCCAAGCU______ .....((((((((.....((((....))))...))))))))................................(((((.((.......)).)))))......(((.....)))....... (-23.04 = -23.84 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:03 2006