Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,398,838 – 4,398,946 |
Length | 108 |
Max. P | 0.588434 |
Location | 4,398,838 – 4,398,946 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 80.40 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -20.39 |
Energy contribution | -19.70 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.32 |
Mean z-score | -1.71 |
Structure conservation index | 0.60 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4398838 108 + 22224390 CUUUUGUGUGGCCUUCUUGGUCACCCGGUUGGGAUUCUCGAUUUCGAUGAGUGAGGCCACGCCCUUCUUGGCAUCGCGCGCUUCCGCUUCGGAGUCAUCGUCGGA-----AUC (..(((.((((((.....)))))).)))..)........(((((((((((((((.((((.........)))).))))..(.(((((...))))).).))))))))-----))) ( -37.70) >DroVir_CAF1 2598 111 + 1 UUUUUGUGUGGCCUUUUUGGUCACACGAUUGGGAUUCUCGAUUUCGAUAAGUGCGGCCACACCCUUUUUGGCAUCACGUUGAUCCGCCUCCGAAUCAUCAUCG--CUGUCAUC .....((((((((.....))))))))((((.(((....((...(((((..(((..((((.........))))..))))))))..))..))).)))).......--........ ( -32.40) >DroWil_CAF1 4236 108 + 1 UUUUUGAGUGGCCUUCUUGGUCACACGAUUGGGAUUCUCGAUUUCGAUGAGAGAUGCCACACCCUUCUUGGCAUCACGUGCUUCAGCCUCAGAGUCAUCUUCGGA-----UUC .......((((((.....)))))).(((....((((((((....)))((((.(((((((.........)))))))....((....)))))))))))....)))..-----... ( -34.80) >DroMoj_CAF1 2233 111 + 1 CUUUUGGGUGGCCUUUUUGGUCACACGGUUGGGAUUCUCGAUUUCGAUAAGCGCGGCCACACCCUUCUUGGCAUCCCGUACUUCUGUCUCCGAAUCAUCAUCA--CUGUCAUC ..(((((((((((.....))))))((((.((((((..(((....)))........((((.........)))))))))).....))))..))))).........--........ ( -28.60) >DroAna_CAF1 1697 105 + 1 UUUCUGCGUAGCCUUCUUGGUCACACGGUUGGGGUUUUCGAUUUCAAUGAGCGAUGCCACGCCCUUUUUGGCAUCGCGCGCUUCCCCUUCUGACU---CGUCAGA-----UUC ...(((.((..((.....))..)).)))..((((....((..........(((((((((.........))))))))).))...)))).(((((..---..)))))-----... ( -34.80) >DroPer_CAF1 1645 108 + 1 UUUCUGGGUGGCCUUUUUGGUCACACGGUUGGGAUUCUCGAUUUCGAUGAGCGAGGCCACGCCCUUUUUGGCAUCUCGCGCCUCUGCUUCUGAGUCAUCCUCGGA-----CUC ..(((((((((((.....))))))..((....((((((((....))).((((((((((..(((......))).....).))))).))))..)))))..)))))))-----... ( -35.90) >consensus UUUUUGGGUGGCCUUCUUGGUCACACGGUUGGGAUUCUCGAUUUCGAUGAGCGAGGCCACACCCUUCUUGGCAUCACGCGCUUCCGCCUCCGAGUCAUCAUCGGA_____AUC (..(((.((((((.....)))))).)))..).((((((((....)))...(((..((((.........))))....)))............)))))................. (-20.39 = -19.70 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:59 2006