Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,391,320 – 4,391,440 |
Length | 120 |
Max. P | 0.866762 |
Location | 4,391,320 – 4,391,440 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -30.34 |
Energy contribution | -30.30 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.30 |
Structure conservation index | 0.96 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4391320 120 + 22224390 ACAUACAAAAGCAGCUGUGUUGUGCCGUGGCUCGUUAAUUAAACUCAAUUGAGAACAGCUUUUUGUCAAAGCGGUUAGGCCAACAACUUGGCUUGAGUCACCCAAGUUCGACUGCAUAUA ..........((((.((.....((..(((((((..........(((....)))(((.(((((.....))))).)))(((((((....)))))))))))))).))....)).))))..... ( -31.90) >DroSec_CAF1 3035 118 + 1 ACAUACAAAAGCAGCUGUGUUGUGCCGUGGCUCGUUAAUUAAACUCAAUUGAGAACAGCUUUUUGUCAAAGCGGUUAGGCCAACAACUUGGCUUGAGUCACCCAAGUUCGACUGCAUA-- ..........((((.((.....((..(((((((..........(((....)))(((.(((((.....))))).)))(((((((....)))))))))))))).))....)).))))...-- ( -31.90) >DroSim_CAF1 3053 118 + 1 ACAUACAAAAGCAGCUGUGUUGUGCCGUGGCUCGUUAAUUAAACUCAAUUGAGAACAGCUUUUUGUCAAAGCGGUUAGGCCAACAACUUGGCUUGAGUCACCCAAGUUCGACUGCAUA-- ..........((((.((.....((..(((((((..........(((....)))(((.(((((.....))))).)))(((((((....)))))))))))))).))....)).))))...-- ( -31.90) >DroEre_CAF1 3166 118 + 1 ACAUACAAAAGCAGCUGUGUUAUGCCGUGGCUCGUUAAUUAAACUCAAUUGAGAACAGCUUUUUGUCAGAGCGGUUAGGCCAAUAACUUGGCUUGAGUCACCCAAGUUCGACUGCAUA-- ..........((((.((..((.((..(((((((..........(((....)))(((.(((((.....))))).)))(((((((....)))))))))))))).))))..)).))))...-- ( -31.10) >DroYak_CAF1 3228 118 + 1 ACAUAUAAAAGCAGCUGUGUUGUACCGCGGCUCGUUAAUUAAACUCAAUUGAGAACAGCUUUUUGUCAGAGCGGUUAGGCCAAUAACUUGGCUUGAGUCACCGAAGUUCGACUGCAUA-- ......(((((((((((((......)))))))...........(((....)))....)))))).(((.(((((((((((((((....))))))))....)))...)))))))......-- ( -31.70) >consensus ACAUACAAAAGCAGCUGUGUUGUGCCGUGGCUCGUUAAUUAAACUCAAUUGAGAACAGCUUUUUGUCAAAGCGGUUAGGCCAACAACUUGGCUUGAGUCACCCAAGUUCGACUGCAUA__ ..........((((.((..((.....(((((((..........(((....)))(((.(((((.....))))).)))(((((((....))))))))))))))...))..)).))))..... (-30.34 = -30.30 + -0.04)
Location | 4,391,320 – 4,391,440 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -31.24 |
Consensus MFE | -28.06 |
Energy contribution | -28.74 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.25 |
Structure conservation index | 0.90 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4391320 120 - 22224390 UAUAUGCAGUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAAGCUGUUCUCAAUUGAGUUUAAUUAACGAGCCACGGCACAACACAGCUGCUUUUGUAUGU ((((.(((((.((((((((.(......).)))))))(((((((.....(((((.....))))).((((((....))(((.....)))))))...))).)))).).)))))...))))... ( -33.90) >DroSec_CAF1 3035 118 - 1 --UAUGCAGUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAAGCUGUUCUCAAUUGAGUUUAAUUAACGAGCCACGGCACAACACAGCUGCUUUUGUAUGU --...(((((.((((((((.(......).)))))))(((((((.....(((((.....))))).((((((....))(((.....)))))))...))).)))).).))))).......... ( -33.30) >DroSim_CAF1 3053 118 - 1 --UAUGCAGUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAAGCUGUUCUCAAUUGAGUUUAAUUAACGAGCCACGGCACAACACAGCUGCUUUUGUAUGU --...(((((.((((((((.(......).)))))))(((((((.....(((((.....))))).((((((....))(((.....)))))))...))).)))).).))))).......... ( -33.30) >DroEre_CAF1 3166 118 - 1 --UAUGCAGUCGAACUUGGGUGACUCAAGCCAAGUUAUUGGCCUAACCGCUCUGACAAAAAGCUGUUCUCAAUUGAGUUUAAUUAACGAGCCACGGCAUAACACAGCUGCUUUUGUAUGU --(((((((((((((((((.(......).)))))))...(((......))).))))....((((((.(((....)))............((....)).....)))))).....)))))). ( -29.00) >DroYak_CAF1 3228 118 - 1 --UAUGCAGUCGAACUUCGGUGACUCAAGCCAAGUUAUUGGCCUAACCGCUCUGACAAAAAGCUGUUCUCAAUUGAGUUUAAUUAACGAGCCGCGGUACAACACAGCUGCUUUUAUAUGU --...(((((((.....))(((......(((((....)))))...(((((...((((......))))(((....)))...............)))))....))).))))).......... ( -26.70) >consensus __UAUGCAGUCGAACUUGGGUGACUCAAGCCAAGUUGUUGGCCUAACCGCUUUGACAAAAAGCUGUUCUCAAUUGAGUUUAAUUAACGAGCCACGGCACAACACAGCUGCUUUUGUAUGU .....(((((.((((((((.(......).)))))))(((((((.....(((((.....))))).((((((....))(((.....)))))))...))).)))).).))))).......... (-28.06 = -28.74 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:56 2006