Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,390,268 – 4,390,380 |
Length | 112 |
Max. P | 0.593849 |
Location | 4,390,268 – 4,390,380 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 96.25 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -25.72 |
Energy contribution | -26.56 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.24 |
Structure conservation index | 0.89 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4390268 112 + 22224390 UCAACAAUAGCAUUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGGCAUUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACGUAUG .........(((.....((.(((((((((.....(((...)))((((((((((((........)))))).)).)))).......))))))..))).)).))).......... ( -32.00) >DroSec_CAF1 2037 112 + 1 UCAACAAUAGCGAUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGACACUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACAUAUG .........(((.....((.(((((((((.....(((...)))((((((((((.(........).)))).)).)))).......))))))..))).)).))).......... ( -24.20) >DroSim_CAF1 2060 112 + 1 UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGGCACUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACAUAUG .......(((.((....((.(((((((((.....(((...)))((((((((((((........)))))).)).)))).......))))))..))).))..)).)))...... ( -32.90) >DroEre_CAF1 2165 112 + 1 UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGACGAGCAGUGCGGCACUAUAUAGCCGCAUCUCCCUCGAAUUCCCACUGUUCUACCGACUGCACUACGUAUG .........((((......((((.((((((....)).......((((((((((((........))))).((......))......))))))).))))..))))..))))... ( -27.40) >DroYak_CAF1 2209 112 + 1 UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGACGAGCAGUGCGGCACUAUAUAGCCGCAUCUCCCUCGAACUCCCACUGUUCUACCGCCUGCACUACGUAUG .........((((............((((((..((........(((..(((((((........)))))))....)))((((.......))))...))..))))))))))... ( -28.10) >consensus UCAACAAUAGCGUUUUAUCUGUAACGGUGCACACGCCCCCGGCGAGCAGUGCGGCACUAUAUAGCCGCAUCUCGCUCGAAUUCCCACUGUUCUACCGACUGCACUACGUAUG .........................((((((..((.....((((((..(((((((........))))))))))))).((((.......))))...))..))))))....... (-25.72 = -26.56 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:54 2006