Locus 1455

Sequence ID X_DroMel_CAF1
Location 4,380,559 – 4,380,653
Length 94
Max. P 0.728788
window2323

overview

Window 3

Location 4,380,559 – 4,380,653
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 72.70
Mean single sequence MFE -18.90
Consensus MFE -6.40
Energy contribution -8.16
Covariance contribution 1.76
Combinations/Pair 1.19
Mean z-score -1.81
Structure conservation index 0.34
SVM decision value 0.42
SVM RNA-class probability 0.728788
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4380559 94 + 22224390
AAAUUGA--UAC-AUAAAUGCA--GAAAUCAACUCGAAUUUUAAGGAAUUGAACUAAUUAGAAUUCGAUUCG----------AUUCUUUUGCAUUUGAAAGUUUGUCCU
.......--...-.((((((((--((((((...(((((((((((.............)))))))))))...)----------))..)))))))))))............ ( -20.42)
>DroSec_CAF1 165768 95 + 1
AUAUUGA--UACCACAAAUGCA--GAAGUCAACUCAAAUUUCAAGGAAUUGAUCCUAUUAGAAUUCGAUUCG----------AUUCUUUUGCAUUUCAAAGUUUGCCCU
.......--......(((((((--((((((...((.(((((..((((.....))))....))))).))...)----------)..)))))))))))............. ( -15.30)
>DroSim_CAF1 153236 95 + 1
AUAUUGA--UACCACAAAUGCA--GAAGUCAACUCGAAUUUUAAGGAAUUGAACCAAUUAGAAUUCGAUUCG----------AUUCUUUUGCAUUUCAAAGUUUGCCCU
.......--......(((((((--((((((...(((((((((((((.......))..)))))))))))...)----------)..)))))))))))............. ( -21.10)
>DroEre_CAF1 176581 106 + 1
AAAUAUA--UAC-AUAUGUGCAGAGAAGUCUACUUGGAUUUUAAGGAAUUCAACUUCUUAAAAUUCGACUAUGUGUGAAAAAGUUCUUUUGCAUUUCAAAAUUUGCCAU
.......--...-..(((.(((((..((((.....((((((((((((.......))))))))))))))))..(((..(((......)))..))).......)))))))) ( -21.40)
>DroYak_CAF1 169047 93 + 1
AAAUAUAUAUAC-AUAUGUGCA--GAAGUCUAUUCG-------------UCAACUUUUUAAAAUUCGAUUAGUUGUGAAAAAGUUCUUUUGCAUUUCAAAAGUUACCAU
............-....(((((--((((.((.((((-------------.(((((..((.......))..)))))))))..))..)))))))))............... ( -16.30)
>consensus
AAAUUGA__UAC_AUAAAUGCA__GAAGUCAACUCGAAUUUUAAGGAAUUGAACUUAUUAGAAUUCGAUUCG__________AUUCUUUUGCAUUUCAAAGUUUGCCCU
...............(((((((..(((......(((((((((((.............)))))))))))...............)))...)))))))............. ( -6.40 =  -8.16 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:51 2006