Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,378,615 – 4,378,709 |
Length | 94 |
Max. P | 0.999410 |
Location | 4,378,615 – 4,378,709 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 77.68 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -17.25 |
Energy contribution | -17.45 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.25 |
Mean z-score | -2.62 |
Structure conservation index | 0.74 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4378615 94 + 22224390 GAUUUCUGAUACAAAUGAAUAUCUUUGGUAU---UUAGA----GAUU---CGUUAACAAUUCAUUCAGAUAUUCAUGUAUAGAGUCAGAGAGGUUUCACUGUAA ..((((((((.(..((((((((((.(((...---((((.----....---..))))....)))...)))))))))).....).))))))))............. ( -17.00) >DroSec_CAF1 163903 93 + 1 GAUCUCUGACACAAAUGAACAUCUUUGAUAU---UUUGC----GAUU---CGUGAACAAUUCAUU-AGAUAUUCAAGUGUAGAGUCAGAGAGGUUUCACUGUAA ..(((((((((((..((((.((((.(((...---((..(----(...---))..))....)))..-)))).))))..)))...))))))))............. ( -24.60) >DroSim_CAF1 151353 93 + 1 GAUCUCUGACACAAAUGAAUAUCUUUGGUAU---UUUGC----GAUU---AGUAAACAAUUCAUU-AGAUAUUCAAGUGUAGAGUCAGAGAGGUUUCACUGUAA ..(((((((((((..(((((((((.(((...---(((((----....---.)))))....)))..-)))))))))..)))...))))))))............. ( -28.20) >DroEre_CAF1 174692 95 + 1 AAUCUCUGACACAAAUGAAUAUCUUUGCCAC---UCUGCUCGCAACUAAGCGUAAA-----CACU-AGAUAUUCAUGAUUAGAGUCAGAGAGGUUUCACUGUAU ..((((((((.(..((((((((((..((...---...)).(((......)))....-----....-)))))))))).....).))))))))............. ( -24.90) >DroYak_CAF1 167161 95 + 1 AUUCUCUGACACAAAUGAAUAUCUAUGCCAUGAAGCUGUUCAAAACU---CGUGUU-----AAUU-AGAUAUUCAUGAAUAGAGUCAGAAAGGUUUCACUGUAU ....((((((.(..(((((((((((...(((((.............)---))))..-----...)-)))))))))).....).))))))............... ( -21.42) >consensus GAUCUCUGACACAAAUGAAUAUCUUUGCUAU___UUUGC____GAUU___CGUAAACAAUUCAUU_AGAUAUUCAUGUAUAGAGUCAGAGAGGUUUCACUGUAA ..((((((((.(..((((((((((..........(((((............)))))..........)))))))))).....).))))))))............. (-17.25 = -17.45 + 0.20)
Location | 4,378,615 – 4,378,709 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 77.68 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -16.39 |
Energy contribution | -17.35 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.14 |
Mean z-score | -3.28 |
Structure conservation index | 0.71 |
SVM decision value | 3.58 |
SVM RNA-class probability | 0.999410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4378615 94 - 22224390 UUACAGUGAAACCUCUCUGACUCUAUACAUGAAUAUCUGAAUGAAUUGUUAACG---AAUC----UCUAA---AUACCAAAGAUAUUCAUUUGUAUCAGAAAUC ...(((.((....)).)))..(((((((((((((((((....((.(((....))---).))----.....---.......)))))))))..))))).))).... ( -16.89) >DroSec_CAF1 163903 93 - 1 UUACAGUGAAACCUCUCUGACUCUACACUUGAAUAUCU-AAUGAAUUGUUCACG---AAUC----GCAAA---AUAUCAAAGAUGUUCAUUUGUGUCAGAGAUC .............((((((((...(((..(((((((((-..(((.((((.....---....----)))).---...))).)))))))))..))))))))))).. ( -23.60) >DroSim_CAF1 151353 93 - 1 UUACAGUGAAACCUCUCUGACUCUACACUUGAAUAUCU-AAUGAAUUGUUUACU---AAUC----GCAAA---AUACCAAAGAUAUUCAUUUGUGUCAGAGAUC .............((((((((...(((..(((((((((-......((((.....---....----)))).---.......)))))))))..))))))))))).. ( -22.44) >DroEre_CAF1 174692 95 - 1 AUACAGUGAAACCUCUCUGACUCUAAUCAUGAAUAUCU-AGUG-----UUUACGCUUAGUUGCGAGCAGA---GUGGCAAAGAUAUUCAUUUGUGUCAGAGAUU .............((((((((.(.....((((((((((-((((-----....))))..((..(.......---)..))..))))))))))..).)))))))).. ( -29.60) >DroYak_CAF1 167161 95 - 1 AUACAGUGAAACCUUUCUGACUCUAUUCAUGAAUAUCU-AAUU-----AACACG---AGUUUUGAACAGCUUCAUGGCAUAGAUAUUCAUUUGUGUCAGAGAAU .............((((((((.(.....((((((((((-(...-----(((...---.))).......(((....))).)))))))))))..).)))))))).. ( -23.30) >consensus UUACAGUGAAACCUCUCUGACUCUACACAUGAAUAUCU_AAUGAAUUGUUCACG___AAUC____GCAAA___AUACCAAAGAUAUUCAUUUGUGUCAGAGAUC .............((((((((...(((.((((((((((..........................................)))))))))).))))))))))).. (-16.39 = -17.35 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:48 2006