Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,362,210 – 4,362,324 |
Length | 114 |
Max. P | 0.813941 |
Location | 4,362,210 – 4,362,324 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 82.62 |
Mean single sequence MFE | -25.06 |
Consensus MFE | -15.26 |
Energy contribution | -15.86 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.13 |
Mean z-score | -2.24 |
Structure conservation index | 0.61 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4362210 114 - 22224390 GUCUCCCUGCAUAUAUCUCCAAAAGAUAUACACACACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCCUGCUCCUCCUGCCAUUAAAAUUACACAUUUUA ((((..((((.(((((((.....)))))))..((.....)).)))).)))).(((((((((.(((((...........))))).....))).))))))................ ( -29.40) >DroSec_CAF1 147787 103 - 1 GUCUCCCUGCAUAUAUCUCCAAAAGAUAUACAC--ACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCC---------UGCCAUCAAAGUUACACAUUUUA ((((..((((.(((((((.....)))))))((.--....)).)))).)))).(((((((((...(((........))).)))---------.))))))................ ( -29.50) >DroSim_CAF1 135526 103 - 1 AUCUCCCUGCAUAUAUCUCCAAAAGAUAUAUAC--ACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCC---------UGUCAUUAAAGUUACACAUUUUA ..(((((((.((((((((.....)))))))).)--)....))).))..(((((((((((...............)))))).)---------))))................... ( -23.86) >DroEre_CAF1 156432 98 - 1 -----------GAUAUCUUCAUAAGAUACACAC--ACACUGGGCAGUAGGCAGAUGACGGAGAGGACAAGAAAACGUCGUCCUGCU---CCCGCCAUCAAAAUUACACAUUUUA -----------..(((((.....))))).....--......(((.(..(((((((((((...............)))))).)))))---..))))................... ( -22.06) >DroYak_CAF1 150146 98 - 1 -----------GAUAUCUUCAUAAGAUAUACAC--ACACUGGGCAGUAGACAGAUGGCGAAAAGGACAAGAAAACGUCGUCCUACU---CCCGCCAUUAAAAUUACACAUUUUA -----------.((((((.....))))))....--.....(((.(((((...(((((((...............))))))))))))---)))...................... ( -20.46) >consensus _UCUCCCUGCAUAUAUCUCCAAAAGAUAUACAC__ACACUGGGCAGUAGACAGAUGGCGGAAAGGACAAGAAAACGUCGUCCU_CU___CCUGCCAUUAAAAUUACACAUUUUA ...........(((((((.....)))))))...............((((...(((((((...(((((...........)))))........)))))))....))))........ (-15.26 = -15.86 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:38 2006