Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,359,457 – 4,359,552 |
Length | 95 |
Max. P | 0.570843 |
Location | 4,359,457 – 4,359,552 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.22 |
Mean single sequence MFE | -22.26 |
Consensus MFE | -15.34 |
Energy contribution | -16.23 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.69 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4359457 95 + 22224390 CCAAGCAUCGAAUCCCAUGGAAAGGCCAACCAAACUAAACCCUCUUCGUGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCUCG------GAUUCAGAUUCA ....(.(((((((((.(((((.(((...............))).)))))((((......(((......))).....))))..)------))))).))).). ( -20.96) >DroSec_CAF1 145111 91 + 1 -----CAUCGAAUCCCUUGGAAAAGCCAACCAAACUAAACCCUCCUCGUGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCACG-----GGAUUCAGAUUCA -----....(((((((((((.....))))..................((((((......(((......))).....)))))))-----))))))....... ( -27.40) >DroYak_CAF1 147367 100 + 1 GCAAGCAUCGAAUCCCCUG-AGAAGCCAACAAAACUAAACCCUCCUGAAGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCUCGCAUUCGGAUUUGGAUUGA .(((...((((((((...(-((...................)))..((.((((......(((......))).....))))))......)))))))).))). ( -18.41) >consensus _CAAGCAUCGAAUCCCAUGGAAAAGCCAACCAAACUAAACCCUCCUCGUGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCUCG_____GGAUUCAGAUUCA ......(((((((((..(((.....)))...................((((((......(((......))).....))))))......)))))).)))... (-15.34 = -16.23 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:37 2006