Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,358,376 – 4,358,473 |
Length | 97 |
Max. P | 0.936092 |
Location | 4,358,376 – 4,358,473 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.35 |
Mean single sequence MFE | -18.11 |
Consensus MFE | -9.63 |
Energy contribution | -10.35 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -2.69 |
Structure conservation index | 0.53 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4358376 97 - 22224390 CAACUUGCACCACCA---CCAC------CCCUACCUCUAC---GUUCUACGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU ((((..((((((...---....------...........(---(.....)).....(((.........)))................)))))).))))........... ( -17.40) >DroSec_CAF1 144064 95 - 1 CAACUUGCACCACCAGCACCAC------CCCCACC--------CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU ((((..((((((..(((.....------.......--------.......)))...(((.........)))................)))))).))))........... ( -17.51) >DroEre_CAF1 152690 86 - 1 CAACUUGCACCGG---------------CACCACC--------CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU ((((..(((((((---------------(......--------.......)))...(((.........))).................))))).))))........... ( -17.32) >DroYak_CAF1 146265 92 - 1 CAACUUGCCCCAACA---GCAC------CACCACC--------CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU ..........(((((---((((------((.....--------......((...))(((.........)))................)))))))))))........... ( -21.60) >DroMoj_CAF1 236535 98 - 1 CUACCUGGCCCGCGC---CCAC------CUGCCCC--CAUCGCCCGAUUUUCCUCGGGCUUCAUUUAUGCCGAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUUUC ......(((....))---)((.------(.((...--....((((((......)))))).........(((((((.........))))))))).).))........... ( -20.90) >DroAna_CAF1 172934 98 - 1 CCACUGCCACUGCCA---CCGCCCCCGCCAGCCCC--------CCUUUUCACUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCCU ..........(((.(---(.((.......(((((.--------............)))))........(((((((.........))))))))).)).).))........ ( -13.92) >consensus CAACUUGCACCACCA___CCAC______CACCACC________CUUCUUCGCUUCGGGCUUCAUUUAUGCCAAUUUUUCAAACUAAUUGGUGCUGUUGACAUCUUUCUU ((((..(((((.............................................(((.........)))((((.........))))))))).))))........... ( -9.63 = -10.35 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:36 2006