Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,347,386 – 4,347,498 |
Length | 112 |
Max. P | 0.991310 |
Location | 4,347,386 – 4,347,498 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -21.88 |
Energy contribution | -23.40 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.08 |
Mean z-score | -3.01 |
Structure conservation index | 0.76 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4347386 112 - 22224390 AAUUUAUCUUCAAACUUAUUCAUACAUCGGUUUUU-CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGCGGGCCAACUUAUGGCGCAUAAAUUGUCGA ................((((..(((((.((.....-.)).)))))..)))).....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -34.60) >DroSec_CAF1 132990 100 - 1 AAUUUAUCUUCAAACUUAU------------UUUU-CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA ...................------------....-....((((....))))....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -28.10) >DroSim_CAF1 126431 100 - 1 AAUUUAUCUUCAAACUUAU------------UUUU-CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA ...................------------....-....((((....))))....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -28.10) >DroEre_CAF1 141418 112 - 1 AGUUUAUCCUCAAACUUAUUCAUAUAUCUGUUUUU-CCCCGUGUGGUAAUACUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA (((((......)))))...................-....((((....))))....((((((((((((((..(((((....)))))((((.....)))))))))))))))))) ( -29.70) >DroYak_CAF1 135203 101 - 1 AUUUUAUCUUCAAACUUAUUCGCAUAUCUGUUUUUGCCCCGUGUGGUAAUGCUCUUUUGGCAAUUUAUGCCGCCGCACAC------------UUAUGGCGCAUAAAUUGUCCA .....................((((.........((((......))))))))......((((((((((((.((((.....------------...)))))))))))))))).. ( -24.30) >consensus AAUUUAUCUUCAAACUUAUUC__A_AUC_GUUUUU_CCCCGUGUGGUAAUGCUCUCUUGGCAAUUUAUGCCGCCGCACACUUGUGGGCCAACUUAUGGCGCAUAAAUUGUCGA ........................................((((....))))....((((((((((((((..((((......))))((((.....)))))))))))))))))) (-21.88 = -23.40 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:34 2006