Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,338,886 – 4,338,977 |
Length | 91 |
Max. P | 0.997158 |
Location | 4,338,886 – 4,338,977 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 70.48 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -11.12 |
Energy contribution | -12.72 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.22 |
Mean z-score | -1.76 |
Structure conservation index | 0.49 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.758869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4338886 91 + 22224390 AAUUAAGCGUGUGUGUCAUAUUUGACAUAAUGCUUUUUAUAGGAAACAGGCCACACUGGGCGAAUGAACAGUGUGACCUUGCUUAACAGCC ..((((((((((((((((....)))))).))))........(....)(((.(((((((..(....)..))))))).))).))))))..... ( -30.40) >DroSec_CAF1 124761 81 + 1 AAUUAAGCUUGUGUGUCAUU----------UGCUUUUUAAAGGAAACAGACCACACUGGGCGAGUAAACAGUGUGACCCUGCUCAACAGCU .....((((((.(((((.((----------(.(((....))).)))..)))(((((((..........))))))).....)).))..)))) ( -17.40) >DroSim_CAF1 118141 81 + 1 AAUUAUGUUUGGGUGUCAUU----------UGCUUUUUAAAGGAAACAGACCACACUGGGCGAGUGAACAGUGUGACCCUGCUUAACAGCU .....((((.(((((((.((----------(.(((....))).)))..)))(((((((..(....)..))))))))))).....))))... ( -21.90) >DroEre_CAF1 132678 71 + 1 GAUUGAGCCUGG---------------UUAUGCUUUUUGUUGGAAGGCGGCCACACCUGGCGAGUAAAUAGUUUGACCCUGCUUAA----- ..((((((..((---------------(((.(((.(((((((..(((.(....).)))..))).)))).))).)))))..))))))----- ( -21.30) >DroYak_CAF1 126635 89 + 1 AAUUGAGUCUGGGUAUCU-AUUAAACAUUAUCCUUUUUUUAGGAAACAGGCCACACCUGGCGCAUAAACGGUGUGACCCUGCCUAACC-CU ..........((((....-...........((((......))))..((((.((((((............))))))..))))....)))-). ( -22.50) >consensus AAUUAAGCCUGGGUGUCAUA_______U_AUGCUUUUUAUAGGAAACAGGCCACACUGGGCGAGUAAACAGUGUGACCCUGCUUAACAGCU ..((((((..((((...........................(....)....(((((((..........))))))))))).))))))..... (-11.12 = -12.72 + 1.60)
Location | 4,338,886 – 4,338,977 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 70.48 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -13.78 |
Energy contribution | -13.66 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.40 |
Mean z-score | -2.38 |
Structure conservation index | 0.60 |
SVM decision value | 2.81 |
SVM RNA-class probability | 0.997158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4338886 91 - 22224390 GGCUGUUAAGCAAGGUCACACUGUUCAUUCGCCCAGUGUGGCCUGUUUCCUAUAAAAAGCAUUAUGUCAAAUAUGACACACACGCUUAAUU ....(((((((.(((((((((((..(....)..)))))))))))....................(((((....))))).....))))))). ( -29.60) >DroSec_CAF1 124761 81 - 1 AGCUGUUGAGCAGGGUCACACUGUUUACUCGCCCAGUGUGGUCUGUUUCCUUUAAAAAGCA----------AAUGACACACAAGCUUAAUU ....(((((((.((..(((((((..........)))))))..))((((........)))).----------............))))))). ( -21.50) >DroSim_CAF1 118141 81 - 1 AGCUGUUAAGCAGGGUCACACUGUUCACUCGCCCAGUGUGGUCUGUUUCCUUUAAAAAGCA----------AAUGACACCCAAACAUAAUU .(((....))).(((((((((((..(....)..)))))))(((.((((.(((....))).)----------)))))))))).......... ( -23.00) >DroEre_CAF1 132678 71 - 1 -----UUAAGCAGGGUCAAACUAUUUACUCGCCAGGUGUGGCCGCCUUCCAACAAAAAGCAUAA---------------CCAGGCUCAAUC -----.......((((.((....)).))))(((.(((...((................))...)---------------)).)))...... ( -11.09) >DroYak_CAF1 126635 89 - 1 AG-GGUUAGGCAGGGUCACACCGUUUAUGCGCCAGGUGUGGCCUGUUUCCUAAAAAAAGGAUAAUGUUUAAU-AGAUACCCAGACUCAAUU .(-(((((((((((((((((((............))))))))))...((((......))))...))))))..-....)))).......... ( -28.80) >consensus AGCUGUUAAGCAGGGUCACACUGUUUACUCGCCCAGUGUGGCCUGUUUCCUAUAAAAAGCAU_A_______AAUGACACCCAAGCUUAAUU .......(((((.((((((((((..........)))))))))))))))........................................... (-13.78 = -13.66 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:29 2006