Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,333,147 – 4,333,242 |
Length | 95 |
Max. P | 0.612813 |
Location | 4,333,147 – 4,333,242 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -17.70 |
Consensus MFE | -12.53 |
Energy contribution | -13.20 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.71 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4333147 95 - 22224390 ---CCAACGCCGCCCUC----CGGAACGCUUCCUCGCGCUGUCCCUCUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU ---..............----.(((.(((......)))...)))...............(((..((((((.((.(((....)))....)).))))))..))) ( -18.70) >DroPse_CAF1 140380 72 - 1 ---CCG------CC--------------CC-UCUGGGGUUGU----CUG--UCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU ---..(------((--------------((-...)))))...----...--........(((..((((((.((.(((....)))....)).))))))..))) ( -19.00) >DroSim_CAF1 112541 92 - 1 ---CCAACG---CCCGC----CGAAACGCUUCCUCGCGCUGUCUGUCUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU ---.....(---(..((----.((..(((......)))...)).))..)).........(((..((((((.((.(((....)))....)).))))))..))) ( -17.10) >DroEre_CAF1 127090 88 - 1 ---CCGACG---CCCUC----CGAAACGCUUCCUCGCGCUGU----CUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU ---..((((---.....----.((..(((......)))...)----)))))........(((..((((((.((.(((....)))....)).))))))..))) ( -17.30) >DroYak_CAF1 121021 95 - 1 CCUCCAACG---CCCUCUUCUCAAAACGCUUCCUCGCGCUGU----CUGUGUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU .........---..............(((......)))....----.............(((..((((((.((.(((....)))....)).))))))..))) ( -15.10) >DroPer_CAF1 142399 72 - 1 ---CCG------CC--------------CC-UCUGGGGUUGU----CUG--UCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU ---..(------((--------------((-...)))))...----...--........(((..((((((.((.(((....)))....)).))))))..))) ( -19.00) >consensus ___CCAACG___CCCUC____CGAAACGCUUCCUCGCGCUGU____CUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU ..........................(((......))).....................(((..((((((.((.(((....)))....)).))))))..))) (-12.53 = -13.20 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:27 2006