Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,318,373 – 4,318,467 |
Length | 94 |
Max. P | 0.707347 |
Location | 4,318,373 – 4,318,467 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -10.56 |
Energy contribution | -11.56 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.47 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4318373 94 + 22224390 UUUUUUUUUGCAAUGAAUU-AAGCUUAUGCUUA---CUCAAUCUAAAUAUAUGGCAAGUGAAA------UAGUGGCCACCAUGGCGUUCUGCUUGCCUUGCCAA .........(((((((..(-((((....)))))---.)))............(((((((..((------(....(((.....))))))..)))))))))))... ( -24.10) >DroSec_CAF1 104767 91 + 1 UUU-------CAAUGAAUUCAAGCUUAUGCUUGAAUUUCAAUCCAAAUAUAUGGCAAGUGAAA------UAGUGGCCACCAUGGCGUUCUGCUUGCCUUGCCAA ...-------...(((((((((((....))))))).))))...........(((((((..((.------(((..(((.....)))...))).))..))))))). ( -28.80) >DroSim_CAF1 98125 88 + 1 UUU-------CAACGAAUUCAAGCUUAUGCUUA---CUCAAUCCAAAUAUAUGGCAAGUGAAA------UAGUGGCCACCAUGGCGUUCUGCUUGCCUUGCCAA ...-------..........((((....)))).---...............(((((((..((.------(((..(((.....)))...))).))..))))))). ( -20.60) >DroEre_CAF1 111768 93 + 1 UUU-------UAAUAGGCU-AAGCUUAUACUUA---UUCAAACCAAGUAUAUGGCAUAUCAAAGCAAAGUGUUGGCCACCAUGGCGUUCUGCUUGCCUCGCCAA ...-------.....((((-((((((((((((.---........))))))...((........)).)))).))))))....(((((............))))). ( -20.30) >DroYak_CAF1 106500 87 + 1 GUG-------AAAUAGGUG-AAACUUAUGCUUA---UUGAAAGCAAAUAUAUAGCAAAUUAAA------UGUUGGCCACCAUGGCGUUCUGCUUGCCUGGCCAA ((.-------..(((((..-...)))))((((.---....)))).........))........------..(((((((....((((.......))))))))))) ( -19.00) >consensus UUU_______CAAUGAAUU_AAGCUUAUGCUUA___UUCAAUCCAAAUAUAUGGCAAGUGAAA______UAGUGGCCACCAUGGCGUUCUGCUUGCCUUGCCAA ....................((((....))))...................((((................((((...))))((((.......))))..)))). (-10.56 = -11.56 + 1.00)
Location | 4,318,373 – 4,318,467 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -22.54 |
Consensus MFE | -13.20 |
Energy contribution | -12.76 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.33 |
Mean z-score | -1.79 |
Structure conservation index | 0.59 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.614728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4318373 94 - 22224390 UUGGCAAGGCAAGCAGAACGCCAUGGUGGCCACUA------UUUCACUUGCCAUAUAUUUAGAUUGAG---UAAGCAUAAGCUU-AAUUCAUUGCAAAAAAAAA ...((((((((((..(((.(((.....))).....------)))..))))))............((((---(((((....))))-.)))))))))......... ( -23.40) >DroSec_CAF1 104767 91 - 1 UUGGCAAGGCAAGCAGAACGCCAUGGUGGCCACUA------UUUCACUUGCCAUAUAUUUGGAUUGAAAUUCAAGCAUAAGCUUGAAUUCAUUG-------AAA .(((((((..(((.((...(((.....)))..)).------)))..)))))))....((..(..((((.(((((((....))))))))))))..-------)). ( -26.60) >DroSim_CAF1 98125 88 - 1 UUGGCAAGGCAAGCAGAACGCCAUGGUGGCCACUA------UUUCACUUGCCAUAUAUUUGGAUUGAG---UAAGCAUAAGCUUGAAUUCGUUG-------AAA (..((..((((((..(((.(((.....))).....------)))..))))))........(((((...---(((((....))))))))))))..-------).. ( -21.40) >DroEre_CAF1 111768 93 - 1 UUGGCGAGGCAAGCAGAACGCCAUGGUGGCCAACACUUUGCUUUGAUAUGCCAUAUACUUGGUUUGAA---UAAGUAUAAGCUU-AGCCUAUUA-------AAA ..(((..((((..((((..((...((((.....))))..))))))...)))).((((((((.......---)))))))).....-.))).....-------... ( -24.50) >DroYak_CAF1 106500 87 - 1 UUGGCCAGGCAAGCAGAACGCCAUGGUGGCCAACA------UUUAAUUUGCUAUAUAUUUGCUUUCAA---UAAGCAUAAGUUU-CACCUAUUU-------CAC ((((((((((.........)))....)))))))..------..................(((((....---.))))).......-.........-------... ( -16.80) >consensus UUGGCAAGGCAAGCAGAACGCCAUGGUGGCCACUA______UUUCACUUGCCAUAUAUUUGGAUUGAA___UAAGCAUAAGCUU_AAUUCAUUG_______AAA .((((((((....).....(((.....)))................)))))))...................((((....)))).................... (-13.20 = -12.76 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:17 2006